CB293596

Overview
NameCB293596
Unique NameCB293596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_BACC1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 10987) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  155 AVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            A+ +LDG+G  +    N +  A  P  D +    P     L A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDV 154          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_BACAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus anthracis GN=gpmI PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  155 AVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            A+ +LDG+G  +    N +  A  P  D +    P     L A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDV 154          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_BACAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis (strain Al Hakam) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.365e-22
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  155 AVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            A+ +LDG+G  +    N +  A  P  D +    P     L A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDV 154          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_PSYA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  164 VLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRF 628
            +LDG+G  + DK N I  AD P +D   +  P    L+ A G  VGLP +   GNSEVGH  LGAGR+  Q +  +   +AS   Y++E   N +K +   G  +H++GLLSDGGVHS  D ++ +   A   GAK + +H   DGRD    S+ ++
Sbjct:   36 ILDGFGHREDDKDNAIAAADMPNLDKIYEQYPHG--LISASGEDVGLP-DGQFGNSEVGHMNLGAGRVLYQDSTRISSEVASRDFYKNEALVNAVKAANTLGGNVHIMGLLSDGGVHSNQDHIEAMCHSALVHGAKNVFVHCFLDGRDTPPKSADKY 189          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 67/156 (42.95%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            VA+ +LDG+        N +  A+ P  D +    P     L+A G AVGLP E  MGNSEVGH  +GAGRI  Q    +++A+  G+  ++E F    N++K   + GT LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDV 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.089e-22
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 2
Query:  164 VLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKP-SFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            + DGWG  +  + N +  A TP +D  +K  P  W  L+A G AVGLP +  MGNSEVGH  +GAGRI  Q    +++++ +G  +++  F N I        +LHL+GL S GG+HS +  L  LLK   E+  K++ +H   DGRD
Sbjct:   12 IFDGWGYREAKEGNAVMTARTPNLDRLEKECP--WCFLKASGEAVGLP-KGMMGNSEVGHLTIGAGRIVNQDLTRINISIKNGDFFKNPVFLNAISNVKANASSLHLMGLASCGGIHSYMPHLHALLKLVQEKDLKKVYIHAFLDGRD 156          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            ++R   VA+ +LDGWG  +  + N   +ADTP MD    + P     L   G  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        + +   GT HL+G++SDGGVH  ++ +    K  ++     + +H LTDGRDV   S++ + ET+
Sbjct:    1 MTRPKPVALCILDGWGLSERREGNAPLLADTPNMDRLMATCPHA--TLTTFGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEEGLFAQNSRLRAFIVTLQDSGGTAHLMGVVSDGGVHGHINHMIAAAKALADENIP-VVIHALTDGRDVAPRSALGYFETL 167          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 62/154 (40.26%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEG----FNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            V +A+LDGWG  +PDK N +  A+   ++  KK+ P  W    A G  VGLP E+ MGNSEVGH  LGAGRI  +    ++    +  I +++     F Y+K +     LHL+GL S+GGVHS  D +  + K A + G   I+  ++TDGRD
Sbjct:    7 VLLAILDGWGISEPDKGNAVDNANMVFVEYLKKTYP--WLKAHASGKWVGLP-ENQMGNSEVGHIHLGAGRINLESLAKLNHETKTNNIAKNDEIVKTFEYVKKN--NSALHLMGLFSNGGVHSHFDHMIAIYKAAIDYGITNIKFDLITDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_MICAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Microcystis aeruginosa (strain NIES-843) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 69/160 (43.12%), Postives = 88/160 (55.00%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD--VLDG 613
            V + +LDGWG       N I +A TP MDS  +  P    L+R     VGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++        I+P  +   LHLIGL S+GGVHS LD L  LL  A  +G   + +H++TDGRD  V DG
Sbjct:    9 VVLVILDGWGYRPQRSDNAIAMAKTPIMDSLWEVYPHT--LIRTSAKDVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGSIQQNQALLKLCAEIRP--KKSKLHLIGLCSEGGVHSHLDHLLGLLDLAKVQGISDVCIHVITDGRDTNVTDG 163          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 68/165 (41.21%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF-ETGT-LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRFAETI 640
            V + +LDGWG  +    N I  A TP MDS  ++ P    L+   G AVGLP +  MGNSEVGH  LGAGRI  Q    +  A   G +  +     +     + GT LHL+GL SDGGVHS LD L  LL  A   G  ++ +H +TDGRD L      F + +
Sbjct:    9 VVLVILDGWGYREELVGNAIAAAHTPVMDSLWQAYPHT--LVYTSGKAVGLP-KGQMGNSEVGHLNLGAGRIVPQELVRISDAAEDGSLAANPALVQVYEGVKQRGTKLHLVGLCSDGGVHSHLDHLLALLDMAKSLGVTQVCVHAITDGRDTLPTEGKTFIQRL 170          
The following BLAST results are available for this feature:
BLAST of CB293596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_BACC12.365e-2243.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAN2.365e-2243.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAH2.365e-2243.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYA23.089e-2239.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST3.089e-2242.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF3.089e-2239.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ROSDO4.035e-2236.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS4.035e-2240.262,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MICAN4.035e-2243.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP44.035e-2241.212,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293596 ID=CB293596; Name=CB293596; organism=Citrus sinensis; type=EST; length=640bp
TGCCCTATGATTCTCTCTCTGTATAATATCTCTTGTTTGTTTCCTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGCGGTGTTGGATGGCTGGGGCGAGTTCAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCCCCTGGGAGGTGGAGGTTGCTCCGAGCTCACGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
ATCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTACGATTCGCAGAAACTATT
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