CB293596

Overview
NameCB293596
Unique NameCB293596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium tetani GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.035e-22
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRF 628
            V + +LDG+G    +  N + +A+ P  D   +  P     L+A G  VGLP E  MGNSEVGH  +G+GR+  Q    +   +  G  +++   NY   +      +LHL+GLLSDGGVHS +D L+ +LK A ++G  R+ +H   DGRDV   S+  +
Sbjct:    6 VMLMILDGFGITNHEDGNAVKMANKPNFDKLLREYPHTQ--LKASGLNVGLP-EGQMGNSEVGHLNIGSGRVIYQELTRITKDINDGVFFENTEINYAIDEAIKNNSSLHLLGLLSDGGVHSHIDHLKAILKLAKDKGLNRVYVHAFLDGRDVPPSSAKEY 163          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S    +A+ +LDG+G  +    N I  A+TP +D    + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  A++ G+  Q+E   N I  + + G  +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPMALVILDGYGHRETQADNAITNANTPVLDGLMANQPNT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKAISDGEFQQNETLVNAIDKAVKAGKAVHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_VIBF1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S    +A+ +LDG+G  +    N I  A+TP +D    + P    L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  A++ G+  Q+E   N I  + + G  +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD
Sbjct:    1 MSAKKPMALVILDGYGHRETQADNAITNANTPVLDGLMANQPNT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKAISDGEFQQNETLVNAIDKAVKAGKAVHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_SULDN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 59/157 (37.58%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  158 VAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRF 628
            + + DG G     +YN  + A  PT D    + P  +  +  HG +VGLP E  MGNSEVGH ++G+GR+  Q    + L+L+  +   +E F  +    ++  LHLIGL+SDGGVHS +D    +   A++ G K + LH++TDGRDV   S+ ++
Sbjct:    7 LVITDGIGYSSGMEYNAFYNAQKPTYDKLFSNTPHSF--IETHGLSVGLP-EGQMGNSEVGHMSMGSGRVLYQDLVKISLSLSENRFRDNEAFRELLA--KSSRLHLIGLMSDGGVHSHIDHFMGIADIAAKEG-KEVFLHLITDGRDVSPTSAKKY 157          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_PHOPR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Photobacterium profundum GN=gpmI PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  134 LSRNNIVAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            +S    +A+ +LDGWG  + +  N I  A+TP MDS   +      L+ A G  VGLP +  MGNSEVGH  +GAGR+  Q    +  ++A G  +++E     +  +   G  +H++GL+S GGVHS  D +   ++ A++RGA++I LH   DGRD
Sbjct:    1 MSAKKPLALVILDGWGYREDNSDNAIANANTPVMDSLIANEANT--LISASGFDVGLP-DGQMGNSEVGHTNIGAGRVVYQDLTRITKSIADGDFFENEALTTAMDKAINAGKAVHIMGLMSPGGVHSHEDHIAAAIEMAAKRGAEKIYLHCFLDGRD 155          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_RHOSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 62/161 (38.51%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRF 628
            V + +LDGWG     + N + +ADTPT D    + P     L  HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K     GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  F
Sbjct:    7 VVLCILDGWGLRAEREANAVALADTPTFDRLMATCPNA--TLVTHGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIAKVKANGGTAHLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEF 163          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.883e-22
Identity = 62/161 (38.51%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRF 628
            V + +LDGWG     + N + +ADTPT D    + P     L  HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K     GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  F
Sbjct:    7 VVLCILDGWGLRAEREANAVALADTPTFDRLMATCPNA--TLVTHGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIAKVKANGGTAHLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEF 163          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL--DGSSV 622
            V + +LDGWG  +  + N +  A TP +DS   + P    LL+A G AVGLP+   MGNSEVGH  LGAGR+  Q    +  A+ +G ++ +    E  + +K   + G  H IGL S+GGVHS +D L  LLK A++ G     +H +TDGRD L  DG+ V
Sbjct:    9 VVLVILDGWGYREAPEGNAVLAARTPVVDSLWATYPHT--LLQASGRAVGLPS-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFHEPLLVEVCHRLKE--QGGRFHFIGLCSEGGVHSHIDHLYGLLKLAAQAGIPAY-VHAITDGRDTLPRDGARV 165          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVRF 628
            V + +LDGWG     + N + +A+TPT D    + P     L  HG  VGLP    MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        K   ++GT HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  F
Sbjct:    7 VVLCILDGWGLRAEREANAVALAETPTFDRLMATCPNA--TLVTHGPDVGLP-RGQMGNSEVGHTNIGAGRVVAMDLGAIDLAIEEGSFPQNPALRDFIGKVKAKSGTAHLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEF 163          
BLAST of CB293596 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.989e-22
Identity = 60/152 (39.47%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  152 VAVAVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            + + +LDG+G  +  +YN I  A+TP  D  + + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++        K +     +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD
Sbjct:    8 LVLIILDGFGHSESPEYNAIFAANTPVYDRLRATQPHG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPVLTGAVDKAASAGKAVHILGLLSDGGVHSHQDHLIAMAELAAQRGAEKIYLHAFLDGRD 156          
The following BLAST results are available for this feature:
BLAST of CB293596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_CLOTE4.035e-2237.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM5.270e-2238.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBF15.270e-2238.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SULDN5.270e-2237.582,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PHOPR5.270e-2237.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOSK6.883e-2238.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS16.883e-2238.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJA8.989e-2241.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS48.989e-2237.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE48.989e-2239.472,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06be01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293596 ID=CB293596; Name=CB293596; organism=Citrus sinensis; type=EST; length=640bp
TGCCCTATGATTCTCTCTCTGTATAATATCTCTTGTTTGTTTCCTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGCGGTGTTGGATGGCTGGGGCGAGTTCAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCCCCTGGGAGGTGGAGGTTGCTCCGAGCTCACGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
ATCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTACGATTCGCAGAAACTATT
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