CB293694

Overview
NameCB293694
Unique NameCB293694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIG 734
            E S     RA +AE + TFLF++  V + M   K       + VG+  +A A   ++  +V     +SGGHINPAVT GL    +++L R+  Y+  Q LG+     ++     +     G   + L  G     G+  E V TF L++ V++     R A     P+L  L +G
Sbjct:   11 EASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFLAVAD---SGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRAVGGMGPLLVGLVVG 182          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 62/212 (29.25%), Postives = 96/212 (45.28%), Query Frame = 3
Query:  165 DVKDYTEPPPAP----LFKPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK----GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPI 773
            D +D  + P AP    +   G   S++F +  +AEF+ATF  ++      +G    + K   V   G+A A+G  + A+VY    +SG H+NPAVT G  +A +    RA  Y + Q   A   + V++    G        L GGA+  S        L  E V TF L++ + + ATD      D  V  +A + +G  + L  L   P+
Sbjct:   28 DKEDDHQNPQAPDGGDVVVCGMPMSFTFLQMLLAEFLATFFLMFAG----LGAITVEEKKGAVTFPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQS--------LVIEFVITFYLMFVIMAVATD------DQAVGHMAGVAVGGTIMLNVLFAGPV 221          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 3
Query:  339 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAA-------------VVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPI 773
            +G+ G++ AFG  +  + Y    ISG H+NPAVT GL    +    + + Y+I Q  GAI  A              V KGF  + Y+    G       YS       E+V T + ++ +  AT  +  A        APL IG A+ ++HL +IP+
Sbjct:   35 IGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTVGLAAGGRFPAGQILPYVIAQVCGAIVAAELLYIIASGAPGFDVTKGFASNGYDAHSPGQ------YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPV 180          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 44/153 (28.76%), Postives = 69/153 (45.10%), Query Frame = 3
Query:  339 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV-------KGFQKSQYEMLGGGANMLSK-GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPI 773
            +G+ G++ AFG  +  + +    ISG H+NPAVT GL+   +      V Y++ Q +G +    V+        GF  +       G    S  GYS    L  EIV   + +  +  ATD +           AP+ IG  + L+HL +IP+
Sbjct:   33 IGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPV 179          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBPA (Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  339 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQ--YEMLGGGANMLSKG------YSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPI 773
            +G+ G+A AFG  +  + +    ISG H+NPAVT GL+   +        Y+I Q +G +    ++      Q  ++++G G      G      YS    L +EIV T + +  +  ATD KR  +       AP+ IG  + L+HL +IP+
Sbjct:   33 IGLLGVALAFGLTVLTMAFAIGHISGCHLNPAVTVGLWAGGRFDTKDVAPYIIAQVIGGLIAGGILYVIATGQAGFDVVGSGFAANGYGEHSPGQYSMLAALVSEIVMTMMFLIVIMGATD-KRAPQG-----FAPIAIGLCLTLIHLISIPV 179          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 3
Query:  339 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV-------KGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPI 773
            +G  G+A AFG  +  + Y    ISG H+NPAV+ GL++  +   ++ + Y++ Q LG +    V+        GF  +      G       GYS    L +E+V T + +  +  AT +KR  +       AP+ IG  + L+HL +IP+
Sbjct:   33 IGYLGVALAFGLSVLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPGGYSLQAALVSEVVLTGMFLLIILGAT-SKRAPQG-----FAPIAIGLTLTLIHLISIPV 178          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  240 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV-GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIG 734
            RA +AE + TFLF++  V + M  +K      T+ G+  +A A   ++  +V     +SGGHINPAVT GL     ++L R+  Y   Q LG+     ++      +  +     +  + G      +  E V TF L++ V++    +R A  +  P+L  L +G
Sbjct:   19 RAVVAELLLTFLFVFSGVGSAMAAAKLGGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGGEEAV---PVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRAVGALGPLLVGLVVG 181          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 3
Query:  204 FKPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAW-AFGGMIFALVYCTAG--ISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG----ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIG 734
            F+  E+      RA +AE V TFLF++  V   M           + +  +A  A    + A V  TAG  +SGGH+NPAVT GL +   ++  RAV Y+  Q L +     +++         L GG     + L +G S   GL  E++ TF L++  ++     R+   +  P+L  L +G
Sbjct:   12 FEHDEIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLR--------FLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPRSQVRAIGPLLTGLIVG 187          
The following BLAST results are available for this feature:
BLAST of CB293694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TIP44_MAIZE1.171e-1129.71Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
NIP14_ORYSJ1.529e-1129.25Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQPZ_BRAJA1.997e-1130.38Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
AQPZ_VIBVY2.608e-1128.76Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]
AQPZ_VIBPA2.608e-1130.07Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=... [more]
AQPZ_PSEAE2.608e-1129.61Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
TIP43_ORYSJ5.811e-1128.31Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE5.811e-1129.35Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ca11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ca11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293694 ID=CB293694; Name=CB293694; organism=Citrus sinensis; type=EST; length=773bp
GCACGTAGGGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCT
ATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGA
TGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCG
CGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCG
CTCTTCAAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCAT
TGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAG
TGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAG
GGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCAC
TGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGT
TCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATG
CAGTGTTTAGGGGCCATATGCGGTGCGGCCGTTGTAAAGGGCTTTCAGAA
AAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCT
ACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTT
GTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTC
TCATGTTCCTATATTGGCACCCCTGCCCATTGGATTTGCTGTGTTTTTGG
TGCACTTGGCAACAATTCCTATC
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