CB293694

Overview
NameCB293694
Unique NameCB293694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.992e-19
Identity = 68/186 (36.56%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKS-KSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP 770
            EL S SF+RA +AEF+ + L+      T++G+  S +      G+ G A AFG     LV     +SGGHINPA+T    LA +LSL RA+ Y++ Q LGA+ GA V+ G   +       G + L      G G   E++ T   +  VF++ D + + R    P  A LP+GF++ L HL  IP
Sbjct:    3 ELRSSSFWRAILAEFLGSLLY------TLLGLGASLRWAPGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGT-LGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIP 177          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.602e-19
Identity = 66/191 (34.55%), Postives = 102/191 (53.40%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA------NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATI 767
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RA+FY+  Q +GAI GA ++       Y +  G A      N LS   + G  +  E++ TF L   +FS+TD++R +     P+ +P L IG +V L HL  I
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL-------YWLAPGNARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGI 177          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 68/182 (37.36%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHL 758
            E  S+SF+RA  AEF  T  +++      +G S  K       +  IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+FY+  Q LGA+ GAAV+ G   +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L IGF++ L HL
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFG----LGASL-KWAAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA--AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHL 173          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.439e-19
Identity = 64/186 (34.41%), Postives = 101/186 (54.30%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATI 767
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RAVFY+  Q +GAI GA ++  +  +     G    N L+   + G  +  E++ TF L   +FS+TD++R +     P+ +P L IG +V L HL  I
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL--YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGI 177          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.888e-19
Identity = 67/184 (36.41%), Postives = 96/184 (52.17%), Query Frame = 3
Query:  210 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 743
            PGELS     +A +AEF++  +F++    + M  SK      T   G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +AV Y + Q LG++    ++K          GG   GA  LS G    + +  EIV TF LVYTV+ +A D K+      + ++AP+ IGF V
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK-------IATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIV 183          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.888e-19
Identity = 64/186 (34.41%), Postives = 100/186 (53.76%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATI 767
            E+ S +F +A  AEF+AT +F++  + + +     K   +   I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL RA FY+  Q +GAI GA ++ G   +     G    N L+   ++G  +  E++ TF L   +F++TD++R +     P+ +P L IG +V L HL  I
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGI 177          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 65/184 (35.33%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  210 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 743
            PGELS     +A +AEF++T +F++    + M  SK       +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +A+ Y + Q LG++    ++K          GG   GA  LS G    + +  E+V TF LVYTV+ +A D K+      + ++AP+ IGF V
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK-------IATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFIV 183          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 67/189 (35.45%), Postives = 97/189 (51.32%), Query Frame = 3
Query:  213 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP 770
            G+  S S  +A ++EF+AT LF++  V + +  +K  S       G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY I QCLG+I    ++      +     G    +S G    +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHG----VSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGP 190          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 3
Query:  240 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK---GFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 743
            +A +AEF++T +F++  V + +  +K    +     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   VFY I Q LGAI GA +V+   G     + + G GA          +G+  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHGLSGVGA---------FEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIV 180          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 67/182 (36.81%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHL 758
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL--YSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHL 173          
The following BLAST results are available for this feature:
BLAST of CB293694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
MIP_CHICK1.992e-1936.56Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP5_MOUSE2.602e-1934.55Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
MIP_RANPI3.399e-1937.36Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP5_RAT4.439e-1934.41Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
TIP12_ORYSJ9.888e-1936.41Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQP5_HUMAN9.888e-1934.41Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
TIP12_MAIZE1.291e-1835.33Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP23_ARATH2.877e-1835.45Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP22_ORYSJ2.877e-1836.21Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
MIP_RABIT3.758e-1836.81Lens fiber major intrinsic protein OS=Oryctolagus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ca11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ca11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293694 ID=CB293694; Name=CB293694; organism=Citrus sinensis; type=EST; length=773bp
GCACGTAGGGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCT
ATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGA
TGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCG
CGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCG
CTCTTCAAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCAT
TGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAG
TGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAG
GGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCAC
TGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGT
TCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATG
CAGTGTTTAGGGGCCATATGCGGTGCGGCCGTTGTAAAGGGCTTTCAGAA
AAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCT
ACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTT
GTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTC
TCATGTTCCTATATTGGCACCCCTGCCCATTGGATTTGCTGTGTTTTTGG
TGCACTTGGCAACAATTCCTATC
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