CB293694

Overview
NameCB293694
Unique NameCB293694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHL 758
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHL 173          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 52/152 (34.21%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  339 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV-------KGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPI 773
            +G+ G+A+AFG  +  + +    ISG H+NPAV+FGL +  +      + Y+I Q +GAI  A V+        GF+ S      G A+    GY+ G G  +E+V T + +  +  ATDA+  A        AP+ IG A+ L+HL +IP+
Sbjct:   35 IGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPV 180          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 65/185 (35.14%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 767
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RAVFY+  Q LGA+ GAA++   + +   + G    N L+   + G  +  E+  T  LV  +F +TD +R  +  H      L IGF+V L HL  I
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH----PALSIGFSVALGHLLGI 176          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.154e-17
Identity = 66/185 (35.68%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 767
            EL S +F RA  AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     ISG HINPAVT    +   +S+ RA FY+  Q LGA+ GAA++   + +  ++ G    N LS   + G  +  E+  T  LV  +F++TD +R       P    L IGF+V L HL  I
Sbjct:    3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALL--HEITPADIRGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTDERRGEN----PGTPALSIGFSVALGHLLGI 176          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.086e-17
Identity = 67/189 (35.45%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  213 GELSSWSFYRAGIAEFVATFLFLYITVLTVM--GVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP 770
            G+  S +  +A +AEF+AT LF++  V + +  G   +       G+  IA A    +F  V   A ISGGH+NPAVTFGL +   +++   +FY I Q LGA     ++K     +     G A     G S+ +G+  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA  P
Sbjct:   10 GDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVA-----GISELEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGP 189          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.086e-17
Identity = 64/184 (34.78%), Postives = 91/184 (49.46%), Query Frame = 3
Query:  210 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 743
            PGE S     RA  AEF +  +F++    + M   K       +  G+   + +    +F  V   A +SGGH+NPAVTFG F+   ++L RA+ Y I Q LGA+    ++K          GG    A  LS G +  + +  EIV TF LVYTV+ +A D K+      + I+APL IG  V
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK-------VSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPLAIGLIV 183          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.255e-17
Identity = 60/174 (34.48%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  240 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLG------AEIVGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGF 737
            RA I+EF+AT +F++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RAV Y + Q LGA+    +++        +  GG  M   G++   G+G       E V TF L+Y  ++   D KR     HV  +APL +GF
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLR--------LATGG--MRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGF 185          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 65/185 (35.14%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 767
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV  +F++TD +R+           L IGF+V L HL  I
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGI 176          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  207 KPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDG-LGA---EIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAV 743
            +P E +     +A +AEF++T +F+     + M  +K     +T   G+   A A    +F  V   A ISGGH+NPAVTFG F+   ++L R + Y I Q LG++    ++K           GG  + + G S G G L A   EIV TF LVYTV++     +N     +  +AP+ IGF V
Sbjct:   10 RPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK--------FATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKN---GSLGTIAPIAIGFIV 183          
BLAST of CB293694 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 64/182 (35.16%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  216 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHL 758
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+  +  +   + G  A N L    S G     EI  T   V  +F+  D +RN +   V     L +GF++ L HL
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHL 173          
The following BLAST results are available for this feature:
BLAST of CB293694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
MIP_MOUSE4.154e-1736.26Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQPZ_PSEPK4.154e-1734.21Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
AQP2_SHEEP4.154e-1735.14Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP2_HUMAN4.154e-1735.68Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
TIP21_ORYSJ7.086e-1735.45Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH7.086e-1734.78Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP31_MAIZE9.255e-1734.48Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQP2_MOUSE1.579e-1635.14Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP11_ARATH2.062e-1634.05Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
MIP_HUMAN2.062e-1635.16Lens fiber major intrinsic protein OS=Homo sapiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ca11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ca11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293694 ID=CB293694; Name=CB293694; organism=Citrus sinensis; type=EST; length=773bp
GCACGTAGGGCCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACCT
ATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGGA
TGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACCG
CGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCCG
CTCTTCAAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCAT
TGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACAG
TGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCAG
GGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCAC
TGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTGT
TCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAATG
CAGTGTTTAGGGGCCATATGCGGTGCGGCCGTTGTAAAGGGCTTTCAGAA
AAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGCT
ACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTTGTTCTT
GTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCGCGATTC
TCATGTTCCTATATTGGCACCCCTGCCCATTGGATTTGCTGTGTTTTTGG
TGCACTTGGCAACAATTCCTATC
back to top