CB293703

Overview
NameCB293703
Unique NameCB293703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 51/165 (30.91%), Postives = 83/165 (50.30%), Query Frame = -3
Query:   59 ARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGANE-----LADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAA-FYHQFILRAG 529
            A++      + Y+ AQ LG I+G G++   A  K+ ++  GG A+         GY+    L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL           PARS G A+    D A  + WLFW+ P +GAA+A  FYH F+   G
Sbjct:   75 AKRFPATELLPYIAAQVLGGIAGAGVLYLIAGGKAGFSLSGGFASNGYGLHSPGGYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPALF-VGDWAIAELWLFWLAPIVGAALAGLFYHAFLDEPG 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = -3
Query:   71 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 520
            ++L R ++Y VAQ LG+     L++       T   G       G S    L  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L           PA S G A++S +   W  QW++WVGP IG  +A   ++ +
Sbjct:   98 ITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWE---WGYQWVYWVGPLIGGGLAGVIYELL 236          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 46/141 (32.62%), Postives = 66/141 (46.81%), Query Frame = -3
Query:   95 YMVAQCLGAISGVGLV-------KAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAI 496
            Y++AQ +GAI   G++         F+ S      G A+    GY+ G G  +E++ T + +  +  ATD +  A        AP+ IG A+ ++HL           PARS G A+      A    WLFWV P IGAAI
Sbjct:   85 YVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPALF-VGGWALQQLWLFWVAPLIGAAI 218          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.648e-11
Identity = 49/159 (30.82%), Postives = 75/159 (47.17%), Query Frame = -3
Query:   68 RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGV------GLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 526
            R++S  RA +Y  AQ LGA+  V L++           GG   +  G++ G        L  E++ TF LVYTV++    +RS        +APL IG       LA          PAR+ G A++      W   W++W+GP IGA +A   ++F++
Sbjct:  103 RRISFARAALYWAAQLLGAVLAVLLLRLAS--------GGMRPM--GFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWN---WRHHWVYWLGPLIGAGMAGALYEFVM 244          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 49/148 (33.11%), Postives = 71/148 (47.97%), Query Frame = -3
Query:   80 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYH 520
            ++++  ++Y VAQ LGA      V  F   Y T           G S   G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA          PARS G AV +     +   W++WVGP +G  +A   +
Sbjct:   96 ITILTGILYWVAQLLGAS-----VACFLLQYVTHGQAIPTHGVSGISEIEGVVMEIVITFALVYTVYATAADPKKGS----LGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGN---FAGNWVYWVGPLVGGGLAGLVY 231          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = -3
Query:   80 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYH 523
            +++++  V Y +AQ LG+ +   L+K     Y T  GG A   + +A G  +  G+  EII TF LVYTV++ A DPK+ +    +  +APL IG  V    LA          PARS G AV +     +   W++WVGP IG  +A   +
Sbjct:   95 QITVITGVFYWIAQLLGSTAACFLLK-----YVT--GGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FSGHWVYWVGPLIGGGLAGLIY 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA  YM AQ LGA++G  ++ +       R     N L    S G   T EI  T   V  +F+  D +R+ +   V     L +GF++ + HL           PARS   A+++     + + W++WVGP IG  + +  + F+L
Sbjct:   80 QMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVA----LAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 53/156 (33.97%), Postives = 72/156 (46.15%), Query Frame = -3
Query:   68 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 520
            +SL RAV Y+ AQ  GA  G  L+      Y    GG     G N + +  STG  +  E++ T  LV  VF++ D +++             IG +V + HL           PARS G AVI  K       W+FWVGP  GA +A+  + FIL
Sbjct:   92 ISLPRAVAYIAAQLAGATVGAALL------YGVTPGGVRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDSRQTLGSPAAM------IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAV---HWIFWVGPLTGAVLASLIYNFIL 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 52/156 (33.33%), Postives = 73/156 (46.79%), Query Frame = -3
Query:   68 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 520
            +SL RA+ Y+ AQ  GA +G  L+      Y    GG     G N + +  STG  +  E++ T  LV  VF++ D +++             IG +V + HL           PARS G AVI  K       W+FWVGP  GA +A+  + FIL
Sbjct:   92 ISLPRAMAYIAAQLAGATAGAALL------YGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLASPAAM------IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAV---HWIFWVGPLTGAVLASLIYNFIL 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = -3
Query:   80 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYH 520
            ++++    Y +AQ LG+     L+K           G    +A G +   G+  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA          PARS G AV++     +   W++W GP IG  +A F +
Sbjct:   96 ITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHG----VAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGD---FSQNWIYWAGPLIGGGLAGFIY 232          
The following BLAST results are available for this feature:
BLAST of CB293703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
AQPZ_GLOVI7.397e-1230.91Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
TIP11_MAIZE1.262e-1133.11Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
AQPZ_PSEPK1.262e-1132.62Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIP32_ORYSJ1.648e-1130.82Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE2.152e-1133.11Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP21_ARATH2.152e-1134.87Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_HUMAN2.152e-1129.61Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQP6_RAT2.152e-1133.97Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP6_MOUSE2.152e-1133.33Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
TIP2_TOBAC4.795e-1132.43Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293703 ID=CB293703; Name=CB293703; organism=Citrus sinensis; type=EST; length=531bp
GAAGAAACTAAAATCGAACACGGGATTGGCTCCTGAATGAACCAAAAGGC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAAAAAGCTGCAATTGC
TGCACCAATGAAGGGTCCAACCCAGAAAAGCCATTGATCATCCCAAGCCT
TGTCCTTGGTGGAAATAACAGCGGCCCCGAGACTCCTTGCTGGGGTAATG
CCAGTGCCAGTGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCCAATGGGGAGCGGTGCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTC
TCTTGGGATCAGTGGCCGAGAATACAGTGTAAACCAAGACAAAGGTGCCG
ATGATCTCGGCGGTCAATCCAACGCCGGTGCTGTACCCATCGGCCAGCTC
GTTGGCCCCACCTCCGTACCTTGTGTAGTAAGATTTTTGGAAAGCCTTGA
CCAACCCAACACCGGAGATAGCACCAAGGCACTGCGCCACCATGTACATC
ACAGCACGGACCAACGACACCTTGCGGGCCA
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