CB293703

Overview
NameCB293703
Unique NameCB293703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 1.920e-60
Identity = 116/163 (71.17%), Postives = 127/163 (77.91%), Query Frame = -3
Query:   41 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKPFG 529
            ARKVS++RAVMY+VAQCLG I GVG+VK   K  Y   GGGAN +A GYSTG  L AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLA          PARS+GAAVI  + KAWDD W+FW GPFIGA  AA YHQ+ILRA A+K  G
Sbjct:  112 ARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 4.277e-60
Identity = 112/163 (68.71%), Postives = 128/163 (78.53%), Query Frame = -3
Query:   41 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKPFG 529
            ARKVSL+RA++YM+AQC GAI GVGLVKAF K  Y ++GGGAN +A GY+ G    AE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLA          PARS GAAVI  K + WDD W+FWVGPF+GA  AA YHQ++LRA A+K  G
Sbjct:  112 ARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.521e-57
Identity = 109/156 (69.87%), Postives = 123/156 (78.85%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RAV YM+ QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  KD +WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  125 ARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.521e-57
Identity = 110/156 (70.51%), Postives = 123/156 (78.85%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RAV Y+V QCLGAI G G+VK FQ + Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  KD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  124 ARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 5.780e-57
Identity = 108/156 (69.23%), Postives = 122/156 (78.21%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RA+ Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  KD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  125 ARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.682e-56
Identity = 108/156 (69.23%), Postives = 121/156 (77.56%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RAV Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  KD AWDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  124 ARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 2.869e-56
Identity = 106/156 (67.95%), Postives = 122/156 (78.21%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RA+ YMV QCLGAI G G+VK FQK  Y   GGGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  +  AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.747e-56
Identity = 105/156 (67.31%), Postives = 123/156 (78.85%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RA+ Y+V QCLGAI G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  KD AW+D W+FWVGPF+GAA+AA YHQ I+RA
Sbjct:  127 ARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.424e-55
Identity = 104/156 (66.67%), Postives = 122/156 (78.21%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RA+ Y++ QCLGAI G G+VK FQ+  Y   GGGAN +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  +D AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  130 ARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.859e-55
Identity = 106/156 (67.95%), Postives = 121/156 (77.56%), Query Frame = -3
Query:   62 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 529
            ARK+SL RA+ Y+V QCLGAI G G+VK FQ   Y   GGGAN +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLA          PARSLGAA+I  KD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  124 ARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
The following BLAST results are available for this feature:
BLAST of CB293703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PIP26_ORYSJ1.920e-6071.17Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP1_ATRCA4.277e-6068.71Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP14_ARATH1.521e-5769.87Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.521e-5770.51Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_ARATH5.780e-5769.23Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP12_ARATH1.682e-5669.23Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_ORYSJ2.869e-5667.95Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_ORYSJ3.747e-5667.31Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_MAIZE1.424e-5566.67Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_VICFA1.859e-5567.95Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293703 ID=CB293703; Name=CB293703; organism=Citrus sinensis; type=EST; length=531bp
GAAGAAACTAAAATCGAACACGGGATTGGCTCCTGAATGAACCAAAAGGC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAAAAAGCTGCAATTGC
TGCACCAATGAAGGGTCCAACCCAGAAAAGCCATTGATCATCCCAAGCCT
TGTCCTTGGTGGAAATAACAGCGGCCCCGAGACTCCTTGCTGGGGTAATG
CCAGTGCCAGTGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCCAATGGGGAGCGGTGCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTC
TCTTGGGATCAGTGGCCGAGAATACAGTGTAAACCAAGACAAAGGTGCCG
ATGATCTCGGCGGTCAATCCAACGCCGGTGCTGTACCCATCGGCCAGCTC
GTTGGCCCCACCTCCGTACCTTGTGTAGTAAGATTTTTGGAAAGCCTTGA
CCAACCCAACACCGGAGATAGCACCAAGGCACTGCGCCACCATGTACATC
ACAGCACGGACCAACGACACCTTGCGGGCCA
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