CB293703

Overview
NameCB293703
Unique NameCB293703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.589e-22
Identity = 65/152 (42.76%), Postives = 89/152 (58.55%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S+ RA+MY++AQC+GAI    ++     S  T    G N+LADG ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL           PARS G+AVI+     + + W+FWVGPFIG A+A   + FIL
Sbjct:   88 QISIFRALMYIIAQCVGAIVATAILSGITSSL-TGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.710e-22
Identity = 66/152 (43.42%), Postives = 87/152 (57.24%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S++RAVMY++AQC+GAI    ++     S       G N LA G  +G GL  EIIGT  LV  V + TD +R  RD  +   APL IGF+V + HL           PARS G+AVI+     + D W+FWVGPFIG A+A   + FIL
Sbjct:   90 QISVLRAVMYIIAQCVGAIVATAILSGITSSLPGN-SLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 4.623e-22
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S++RA+MY++AQC+GAI    ++     S       G N LA G ++G GL  EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL           PARS G++VI+     + D W+FWVGPFIGAA+A   + FIL
Sbjct:   90 QISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S++RA+MY++AQC+GAI    ++     S       G N LA G ++G GL  EIIGT  LV  V + TD +R  RD  +    PL IGF+V + HL           PARS G++VI+     + D W+FWVGPFIGAA+A   + FIL
Sbjct:   90 QISILRAIMYIIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD-RRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22
Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL           PARS G+AV++   + + + W+FWVGPFIG A+A   + FIL
Sbjct:   88 QISILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLT---RNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 6.037e-22
Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S++RAVMY++AQC+GAI    ++     S       G NELA G ++G GL  EIIGT  LV  V + TD +R  RD  +    PL IG +V + HL           PARS G++VI+   K   D W+FWVGPFIG A+A   + FIL
Sbjct:   90 QISILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALAVLIYDFIL 233          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 7.885e-22
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S+ RA+MY++AQC+GAI    ++     S       G N+LADG ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL           PARS G+AVI+     + + W+FWVGPFIG A+A   + FIL
Sbjct:   88 QISIFRALMYIIAQCVGAIVATAILSGITSSLPGN-SLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 1.030e-21
Identity = 63/152 (41.45%), Postives = 90/152 (59.21%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S++RAVMY++AQC+GAI    ++     S       G N+LA G ++G GL  EIIGT  LV  V + TD +R  RD  +   APL IG +V + HL           PARS G+AV++   + + + W+FWVGPFIG+A+A   + FIL
Sbjct:   88 QISILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVLT---RNFSNHWIFWVGPFIGSALAVLIYDFIL 231          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 59/152 (38.82%), Postives = 81/152 (53.29%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++S+++AVMY++AQCLGA+    ++             G N L+ G S G GL  EI+ TF LV  V + TD +R      VP    L IG +V + HL           PARS G+AV++   K +   W+FWVGP IG A AA  + FIL
Sbjct:   92 QISILKAVMYIIAQCLGAVVATAILSGITSGLENN-SLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSVP----LAIGLSVALGHLIAIDYTGCGMNPARSFGSAVLT---KNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = -3
Query:   71 RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 526
            RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR+     V     L IGF+V + HL           PARS G AVI      W++ W++WVGP IGA +A   ++++
Sbjct:  108 RKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251          
The following BLAST results are available for this feature:
BLAST of CB293703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
AQP1_HUMAN1.589e-2242.76Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_PIG2.710e-2243.42Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN4.623e-2242.11Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_SHEEP6.037e-2242.11Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE6.037e-2241.45Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_CANFA6.037e-2242.76Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_PONAB7.885e-2242.11Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_RAT1.030e-2141.45Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQPA_RANES2.805e-1938.82Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP4_RAT4.784e-1936.84Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293703 ID=CB293703; Name=CB293703; organism=Citrus sinensis; type=EST; length=531bp
GAAGAAACTAAAATCGAACACGGGATTGGCTCCTGAATGAACCAAAAGGC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAAAAAGCTGCAATTGC
TGCACCAATGAAGGGTCCAACCCAGAAAAGCCATTGATCATCCCAAGCCT
TGTCCTTGGTGGAAATAACAGCGGCCCCGAGACTCCTTGCTGGGGTAATG
CCAGTGCCAGTGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCCAATGGGGAGCGGTGCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTC
TCTTGGGATCAGTGGCCGAGAATACAGTGTAAACCAAGACAAAGGTGCCG
ATGATCTCGGCGGTCAATCCAACGCCGGTGCTGTACCCATCGGCCAGCTC
GTTGGCCCCACCTCCGTACCTTGTGTAGTAAGATTTTTGGAAAGCCTTGA
CCAACCCAACACCGGAGATAGCACCAAGGCACTGCGCCACCATGTACATC
ACAGCACGGACCAACGACACCTTGCGGGCCA
back to top