CB293703

Overview
NameCB293703
Unique NameCB293703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 50/154 (32.47%), Postives = 80/154 (51.95%), Query Frame = -3
Query:   68 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 529
            A ++SL RA+ Y++AQ LGA++G G++     +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP+GF++ + HL           PARS   AVI+   + + + W+FW GP +GAA+AA  ++  L
Sbjct:   78 ASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAA-VRGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVIT---RNFTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.348e-13
Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = -3
Query:   68 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTR-YGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 520
            +S+ RA +Y + Q L + +       F  SY T   G   + LA G S   G+  EII TF L++TV++   DPK+ + D   P+L     GF V    LA          PARS G A++S     W D W++WVGP IG  +A F ++ +L
Sbjct:   92 ISVFRAFLYWIDQLLASSAA-----CFLLSYLTGGMGTPVHTLASGVSYTQGIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 56/160 (35.00%), Postives = 78/160 (48.75%), Query Frame = -3
Query:   47 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAF-YHQFILRAGAVKP 520
            ++++  + Y +AQCLG+     L+K           G    +A G     G+  EII TF LVYTV++ A DPK+ +    + V+AP+ IGF V    LA          PARS G AV S     +   W++W GP IG A+A F Y    + A A  P
Sbjct:   96 ITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHG----VAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIYGDVFITAHAPLP 244          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G   T EI  T   V  +F+  D +R+ R   V     L IGF++ + HL           PARS   AV++   + + + W++WVGP IG A+    + FIL
Sbjct:   80 QMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAI-RGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS----LAIGFSLTLGHLFGLYYTGASMNPARSFAPAVLT---RNFTNHWVYWVGPIIGGALGGLVYDFIL 223          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA+ YMVAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL           PARS   A+++   + + + W++WVGP IGA + +  + F+L
Sbjct:   80 QMSLLRAICYMVAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT---RNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 45/155 (29.03%), Postives = 74/155 (47.74%), Query Frame = -3
Query:   65 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG--GANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILR 523
            ++S+++A  Y++ QC+GAI+G  ++K          GG  G +      +    +  E + TF+LV+ V + +DP R      +   APL +G A+   HL           PARS G AV+      W   W++WVGP  G  +A   ++ I +
Sbjct:   88 EISILKAAFYIIVQCVGAIAGAAVIKVALDGV---AGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVV---QGVWTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = -3
Query:   74 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQF 523
            ++S++RAV Y +AQ LG+I    +++    +           ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L           PA + G +++  +   W   W+FWVGP +GAA+AA  +++
Sbjct:   97 RISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRP----SGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQ---WHQHWIFWVGPLLGAALAALVYEY 236          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = -3
Query:   47 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKP 523
            +++++  V Y +AQ LGAI G  LV+         +G        G     G+  EII TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L           PARS G AV S     + + W++WVGP +G  +A   ++++   G   P
Sbjct:   96 QITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAP 242          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA+ Y+VAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL           PARS   A+++   + + + W++WVGP IGA + +  + F+L
Sbjct:   80 QMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT---RNFTNHWVYWVGPVIGAGLGSLLYDFLL 223          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.738e-13
Identity = 47/152 (30.92%), Postives = 75/152 (49.34%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S G   T EI  T   V  +F+  D +R+ R   V     L +GF++ + HL           PARS   A+++   + + + W++WVGP IG  + +  + F+L
Sbjct:   80 QMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT---RNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
The following BLAST results are available for this feature:
BLAST of CB293703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
MIP_CHICK7.903e-1432.47Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP41_ARATH1.348e-1335.29Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP_ANTMA2.300e-1335.00Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
MIP_RANPI2.300e-1332.89Lens fiber major intrinsic protein OS=Rana pipiens... [more]
MIP_BOVIN2.300e-1331.58Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP_DROME2.300e-1329.03Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIPA_PHAVU5.123e-1331.79Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP22_ORYSJ6.691e-1332.50Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
MIP_SHEEP6.691e-1330.92Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_CANFA8.738e-1330.92Lens fiber major intrinsic protein OS=Canis famili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293703 ID=CB293703; Name=CB293703; organism=Citrus sinensis; type=EST; length=531bp
GAAGAAACTAAAATCGAACACGGGATTGGCTCCTGAATGAACCAAAAGGC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAAAAAGCTGCAATTGC
TGCACCAATGAAGGGTCCAACCCAGAAAAGCCATTGATCATCCCAAGCCT
TGTCCTTGGTGGAAATAACAGCGGCCCCGAGACTCCTTGCTGGGGTAATG
CCAGTGCCAGTGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCCAATGGGGAGCGGTGCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTC
TCTTGGGATCAGTGGCCGAGAATACAGTGTAAACCAAGACAAAGGTGCCG
ATGATCTCGGCGGTCAATCCAACGCCGGTGCTGTACCCATCGGCCAGCTC
GTTGGCCCCACCTCCGTACCTTGTGTAGTAAGATTTTTGGAAAGCCTTGA
CCAACCCAACACCGGAGATAGCACCAAGGCACTGCGCCACCATGTACATC
ACAGCACGGACCAACGACACCTTGCGGGCCA
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