CB293703

Overview
NameCB293703
Unique NameCB293703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = -3
Query:   77 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGL----TAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQ 520
            ++L+R ++Y +AQ LG++    ++K           GG    A G S GVG+      EI+ TF LVYTV++ A DPK  +    +  +AP+ IGF V    LA          PA + G AV+S     W + W++W GP +G  IA   ++
Sbjct:   98 ITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSW---TWTNHWVYWAGPLVGGGIAGLIYE 235          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LTAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA+ Y +AQ LGA+    L++           GG        ++GVG    +  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA          PAR  G A++  +   W   W++W+GPF+GA +A   +++++
Sbjct:  102 RLSLIRALFYWLAQLLGAVVATLLLRLTT--------GGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G   T EI  T   V  +F+  D +R+ R   V     L +GF++ + HL           PARS   A+++   + + + W++WVGP IG  + +  + F+L
Sbjct:   78 QMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT---RNFSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 46/152 (30.26%), Postives = 75/152 (49.34%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G   T EI  T   V  +F+  D +R+ R   V     L +GF++ + HL           PARS   A+++   + + + W++WVGP IG  + +  + F+L
Sbjct:   80 QMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT---RNFSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 50/151 (33.11%), Postives = 75/151 (49.67%), Query Frame = -3
Query:   68 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 520
            +SL RAV Y+ AQ +GA  G  L+         R   G N + +  STG  +  E++ T  LV  VF++TD ++++            IG +V + HL           PARS G A+I  K   +   W+FWVGP +GA +A+  + F+L
Sbjct:   95 ISLPRAVAYVAAQLVGATVGAALLYGVMPGDI-RETLGINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGSPATM------IGISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = -3
Query:   65 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFILR 523
            +V L+ ++ Y+ AQ LG I+G G++     + Y R   G   LA G +TG     E++ T +L   V   +    +  D  +  +AP  IG A+F+              P R LG ++IS     W   W++W+GP +GA +AAF ++ +L+
Sbjct:  108 RVGLIDSLYYVAAQILGCIAGAGILYGCLPNMY-RIDLGVPHLAPGMNTGQAFLMEMMLTSILCLCVLGTS--VFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISG---VWSHHWVYWLGPIVGAILAAFIYRCLLQ 254          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = -3
Query:   80 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYH 520
            ++L+    Y +AQCLG+I    L+  F  +       G +    G S G+G    +  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA          PARS G AV+S         W++WVGP +G A+A   +
Sbjct:   96 ITLITGFFYWIAQCLGSIVAC-LLLVFVTN-------GKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = -3
Query:   80 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYH 520
            ++++    Y +AQCLG+I    L+            G    +A G     G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA          PARS G AV+S     +   W++WVGP +G A+A   +
Sbjct:   96 ITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHG----VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 49/151 (32.45%), Postives = 75/151 (49.67%), Query Frame = -3
Query:   71 VSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 520
            ++L R ++Y +AQ LG+     L++       T   G       G S    L  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    L           PA S G A++S    +W+ QW++WVGP IG  +A   ++ +
Sbjct:   98 ITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSW---SWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of CB293703 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 46/152 (30.26%), Postives = 74/152 (48.68%), Query Frame = -3
Query:   68 KVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLTAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLAXXXXXXXXXXPARSLGAAVISTKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 523
            ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S     T EI  T   V  +F+  D +R+ R   V     L +GF++ + HL           PARS   A+++   + + + W++WVGP IG  + +  + F+L
Sbjct:   80 QMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPA-VRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA----LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILT---RNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
The following BLAST results are available for this feature:
BLAST of CB293703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TIP11_ARATH1.491e-1233.33Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP31_ORYSJ1.947e-1230.57Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
MIP_RAT1.947e-1230.26Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.947e-1230.26Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQP6_HUMAN1.947e-1233.11Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
AQPA_DICDI3.321e-1230.07Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
TIP23_ARATH4.337e-1234.21Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP22_ARATH4.337e-1233.11Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP11_ORYSJ4.337e-1232.45Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
MIP_CAVPO7.397e-1230.26Lens fiber major intrinsic protein OS=Cavia porcel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293703 ID=CB293703; Name=CB293703; organism=Citrus sinensis; type=EST; length=531bp
GAAGAAACTAAAATCGAACACGGGATTGGCTCCTGAATGAACCAAAAGGC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAAAAAGCTGCAATTGC
TGCACCAATGAAGGGTCCAACCCAGAAAAGCCATTGATCATCCCAAGCCT
TGTCCTTGGTGGAAATAACAGCGGCCCCGAGACTCCTTGCTGGGGTAATG
CCAGTGCCAGTGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCCAATGGGGAGCGGTGCCAAAACGGGAACGTGGGAGTCTCTGGCGCTTC
TCTTGGGATCAGTGGCCGAGAATACAGTGTAAACCAAGACAAAGGTGCCG
ATGATCTCGGCGGTCAATCCAACGCCGGTGCTGTACCCATCGGCCAGCTC
GTTGGCCCCACCTCCGTACCTTGTGTAGTAAGATTTTTGGAAAGCCTTGA
CCAACCCAACACCGGAGATAGCACCAAGGCACTGCGCCACCATGTACATC
ACAGCACGGACCAACGACACCTTGCGGGCCA
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