CB293706

Overview
NameCB293706
Unique NameCB293706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293706_ssr65 microsatellite CB293706_ssr65:65..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3249 contig Csv1_Contig3249:50..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP1_SPIOL (Acyl carrier protein 1, chloroplastic OS=Spinacia oleracea GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 62/136 (45.59%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  111 SVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 518
            S T T     S S   K +QG               SFP+LR  ++ R     AAK ET+DKVC IVK++LAL AD   T +S+F+ LGADSLDTVEIVM L            AQ IST+Q AAD+IE L+E K+
Sbjct:    5 SATTTVRVQPSSSSLHKLSQGNGRCSSIVCLDWGKSSFPTLR--TSRRRSFISAAKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 56/102 (54.90%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  216 KSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 518
            +S  S  +R  P R  VSCAAKPETVDKVC +V+KQL+L      T  +KFAALGADSLDTVEIVMGL            AQ+I+TV+ AA LIE+L+  K+
Sbjct:   34 RSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  240 RSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            RS P R  VSCAAKPETV+KV +IVKKQL+L  D     E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LI++L++ K
Sbjct:   41 RSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEKAQKITTVEEAAELIDELVQAK 133          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP3_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  228 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            +LR     R  VSCAAKPET++KV +IVKKQL+L  D     E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L+  K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVLLK 133          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP3_ARATH (Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  228 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 518
            S  +R  P R  V CAAKPETVDKVC +V+KQL+L      T  +KFAALGADSLDTVEIVMGL            AQ+I+TV+ AA LIE+L+  K+
Sbjct:   38 SFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=ACP-1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.560e-19
Identity = 60/136 (44.12%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  108 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            ASV+  ++C+ +   SF++                 +S PS R+       VSCAAK ET++KV  IVKKQL+L  D     E+KFA LGADSLDTVEIVMGL            AQ I+TV+ AA+LIE+LI  K
Sbjct:    7 ASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLS------VSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP2_SPIOL (Acyl carrier protein 2, chloroplastic OS=Spinacia oleracea GN=ACL1.2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 62/138 (44.93%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  105 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPR-FRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            MAS+TG+S    S  C+  Q+                +  P +     PR   VSCAAKPE V KV  IVK QLAL  D   TGE+KF+ +GADSLDTVEIVM L           +AQTI+T+Q+AAD+IE L + K
Sbjct:    1 MASITGSSV---SFKCAPLQSSFNSKNYALKSSVTFWRRTPVM-----PRGLSVSCAAKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEIGADSLDTVEIVMKLEEEFGVTVEEENAQTITTIQEAADMIEALQQNK 130          
BLAST of CB293706 vs. ExPASy Swiss-Prot
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.C1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  243 SAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTGTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 515
            S  R  +SCAAK ETV+KV +IVKKQL+L  D     E+KF  LGADSLDTVEIVMGL            AQ I+TV+ AA+LIE+L++ K
Sbjct:   43 SRTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEKAQKIATVEQAAELIEELMQAK 133          
The following BLAST results are available for this feature:
BLAST of CB293706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_SPIOL4.543e-2045.59Acyl carrier protein 1, chloroplastic OS=Spinacia ... [more]
ACP2_ARATH1.012e-1954.90Acyl carrier protein 2, chloroplastic OS=Arabidops... [more]
ACP1_BRANA1.012e-1958.06Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP3_BRANA2.945e-1955.21Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP3_ARATH6.560e-1955.10Acyl carrier protein 3, chloroplastic OS=Arabidops... [more]
ACP1_ARATH6.560e-1944.12Acyl carrier protein 1, chloroplastic OS=Arabidops... [more]
ACP2_SPIOL1.119e-1844.93Acyl carrier protein 2, chloroplastic OS=Spinacia ... [more]
ACP5_BRANA5.553e-1854.95Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293706 ID=CB293706; Name=CB293706; organism=Citrus sinensis; type=EST; length=709bp
GCTCAGTCTCAGACACACATTACATAGCACGCAGTCTTCGTGCTCTTCGT
CGTCCTCTCTCTCGCTCTCTCTCTTTTCAACTTCAAATCTCAGATCTCTA
TTCAATGGCTTCAGTTACAGGAACTTCAGCCTGCATGACCTCTCTGTCTT
GCTCTTTCAAGCAGACCCAGGGTAGGATCTCTAGTGTGAATTCAGTTTCA
CTTTCCATCAATGGGAAAAGCTTCCCATCCCTTAGAATGCGATCAGCACC
CCGCTTCCGGGTTTCCTGTGCGGCCAAGCCAGAGACCGTGGATAAGGTTT
GTCAAATTGTGAAGAAGCAGTTGGCACTCCCAGCAGATACTACCGGTACC
GGAGAGTCAAAATTCGCTGCCCTTGGAGCTGATTCTCTTGATACGGTTGA
GATTGTGATGGGACTGGAGGAGGAATTTGGGATCAGCGTTGAAGAAGAAA
GTGCCCAGACCATCTCAACCGTTCAAGATGCTGCAGATCTGATTGAGAAG
CTCATTGAGACCAAGAGTGCTTAATTAAAATGGTCTGGAGAGAGAGCCGG
GGCTTACGGACTTAGTTCGTCTAGTATCGTTTTCGATCTTTTTGTTGGCT
TGTCTCAAGGAGTTTCTAGCTTGTATTGTGAACTTGTCAGGGGCTTTTCT
ATTCTGTTGTTCCTTCTATTAGAGAGAACTCAATTAATCAGTTTGCTTGG
AATCAAAAA
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