CB293711

Overview
NameCB293711
Unique NameCB293711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13215 contig Csv1_Contig13215:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.793e-22
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 3
Query:   72 ALKLACAVLLMCMVM-GAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            +L+++C V LMCMV+  AP+A+AA++CG V+ +L  C+              CC G+K LN AA TT DR++ CNCLK++AGSI  L     + LP +CGV +PY IS S +C+ +R
Sbjct:    3 SLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLKGGPGPSPQ--CCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.059e-22
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   75 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+              CC+G+ +LN+ A TTPDRQ  C CL  AA S   LN   A+GLP+ CGVNIPY+IS S +C+ VR
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG--CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.059e-22
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   69 MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            M  K+AC V+L CMV+ AP A+A ++CGQV S L  C+              CC G+K L  AA +  DR++ C CLK+AA +I+ +++  A+GLP  CGVNIPY+ISPS DCS+V+
Sbjct:    3 MVGKIACFVVL-CMVVVAPHAEA-LSCGQVQSGLAPCLPYLQGRGPLGS---CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.059e-22
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 3
Query:   63 LYMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 416
            L +A+ +  AV++   V+ A  ++AA++CGQV+S++  C+              CCSG++SLNSAA TT DR++ CNCLK AA  I  LN   A+ +P +CGV++PY IS S DCSRV
Sbjct:    4 LAVAIAVVAAVVV---VLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAG-CCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.995e-22
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   75 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+              CCSG+ SLN+ A TTPDRQ  C CL  AA ++  +N+  A+GLP+ CGVNIPY+IS + +C+ V+
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA--CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   75 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            +KL+C VL  CM++  PIA  AA++CG V+ +L AC+              CC+G+ +LN+ A TTPDRQ  C CL  AA +   LN   A+GLP+ CGVNIPY+IS S +C+ VR
Sbjct:    5 VKLSCLVLA-CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG--CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   96 LLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            L++ + M   +A A +TCGQVTSSL  C+              CC+GI+++N  A TT DRQ+ CNCLK  AGSI  +N N A+GLP +CGVN+PY+IS S +C+ V+
Sbjct:   11 LVVALCMAVSVAHA-ITCGQVTSSLAPCIGYVRSGGAVPPA--CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 3
Query:   81 LACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 416
            L  A  L+ M+  AP A  A+ CGQV S ++ C+              CC+G++ L++ A ++ DRQ+VCNCLK  A  I NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct:    7 LLMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQGGPGPSGE--CCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   57 RTLYMALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRV 416
            RT  +A+     V L+  ++ A  ++AA++CGQV S++  C+              CCSG++SLN+AA TT DR++ CNCLK AA  +  LN   A+ +P +CGV+IPY IS S DCSRV
Sbjct:    3 RTQQLAVVATAVVALV--LLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAG-CCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB293711 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   78 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACMXXXXXXXXXXXXXXCCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIRNLNLNLASGLPRQCGVNIPYQISPSVDCSRVR 419
            K+AC V+  CMV+ AP A++ ++CG+VTS L  C+              CC G+K L  AA T  DR++ C CLK+AA SI+ ++   A+GLP  CGVNIPY+ISPS DCS V+
Sbjct:    6 KIACFVVF-CMVVVAPHAES-LSCGEVTSGLAPCLPYLEGRGPLGG---CCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
The following BLAST results are available for this feature:
BLAST of CB293711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTP1_LENCU1.793e-2244.44Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTPB_BRAOT3.059e-2247.41Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP2_TOBAC3.059e-2247.01Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SORBI3.059e-2244.92Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP3_BRANA3.995e-2245.69Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP1_BRANA6.814e-2246.55Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP_MALDO8.900e-2247.22Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_HORVU8.900e-2243.75Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP_MAIZE1.162e-2143.33Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_SOLLC1.162e-2147.37Non-specific lipid-transfer protein 2 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293711 ID=CB293711; Name=CB293711; organism=Citrus sinensis; type=EST; length=640bp
GCCCTAGGAAGAAAAGTTCCAAGTTAAGCAACATTCTCATTTCTCAGAGC
TAATTAAGAACATTATACATGGCTCTTAAGCTTGCTTGTGCTGTGCTGCT
AATGTGCATGGTGATGGGTGCGCCCATTGCCCAAGCTGCCGTCACATGTG
GCCAAGTGACAAGCTCTCTTCAAGCGTGCATGCCATATGTGACGGGCCCC
GGTGGAGGCGCTGTGCCGCCAGCCTGCTGTAGCGGGATTAAGAGTCTTAA
CTCCGCAGCCACCACCACACCCGACCGCCAGAGCGTTTGCAACTGCTTGA
AAACCGCTGCTGGCTCCATCAGAAACCTCAACCTCAACCTCGCTTCTGGC
CTCCCACGCCAGTGTGGCGTCAACATTCCTTACCAAATCAGCCCATCCGT
TGACTGCAGCAGAGTGAGATGAAGATCTTGGAAAAGAGAATATATGCTGA
AGTATTATTATATATAATATGAATATAAAATGGAATAATAAAGTGGGTGA
TATGGACTCTCCTAGGTCAAGAGAGTATTAGTACTATGCATCTATCATAT
ATGTACCAGAGTGTCATCCACCGAGTCCCTTGCCACGATTCTCATATATA
ATATACTACTTTGTTATTTNNAANAAAAAAAAAAAAAAAA
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