CB293712

Overview
NameCB293712
Unique NameCB293712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:588..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.450e-38
Identity = 63/101 (62.38%), Postives = 86/101 (85.15%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y FL ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.691e-37
Identity = 62/101 (61.39%), Postives = 85/101 (84.16%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.691e-37
Identity = 63/101 (62.38%), Postives = 84/101 (83.17%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVPSY F  ++ +++G
Sbjct:  174 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.691e-37
Identity = 62/101 (61.39%), Postives = 85/101 (84.16%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.392e-37
Identity = 62/101 (61.39%), Postives = 83/101 (82.18%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+ +I     VD+  LRDPQ D +RVK PEW+++VGVCTHLGC+P+ N+GDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F+ ++ +++G
Sbjct:  172 LFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 272
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 60/101 (59.41%), Postives = 84/101 (83.17%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++G+CTHLGC+P+ NAGDFGG++CPCHGSHYD+SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVPIANAGDFGGYYCPCHGSHYDVSGRIRLGPAPLNLEVPPYEFTSDDMVVVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKRPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
[Close]
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2 
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
The following BLAST results are available for this feature:
BLAST of CB293712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_SAISC4.450e-3862.38Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA1.691e-3761.39Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_BOVIN1.691e-3762.38Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ1.691e-3761.39Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CHICK8.392e-3761.39Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE1.096e-3659.41Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR1.096e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA1.096e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HYLSY1.096e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN1.096e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293712 ID=CB293712; Name=CB293712; organism=Citrus sinensis; type=EST; length=790bp
AGGCCACAGGACCCCAGCTGATATGAATATGAATCAGTTACACCGGTTTC
ATGCAAAGCTGCAGCAGCACATCTATGTTATTGAGAGAAGAGAAAAAACG
GATAAGAAGCTTTCCCTTCGCCTCTTATAAAAGGGATTGTAGAAAGAAAT
CAAAGATACAGCAAGGAGCAATCGGAGCCGATCACCATTCTGTAGATGAA
CATACCCATAATAAAGAGAGCCGGAGAGCCCTCTGCATCACTATTGGTTG
AAAAAGTTTAAGCACTGCTAAAAAAGTAGTAAAACAAAAACAATGAAAAT
TTAGGTTAAAAGACAATGTGTCAAAACCAGGCAACTTATTCTGAGTTACA
GTATCCCAACCCCAATGAAAGGGTGGCAAGACACCAAGATAGACATTTAT
CTTCGACATTATCTGATAAAATATTAAAAAAAAAAGTGAGATCCCAAATA
ACCATGGATCACCGGGACAGGACGGCACACTTATCAACCAATGAGCATCT
TGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAAATTGGATGGGGCT
GGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAGAACCATGGCAAGG
GCAAAACCATCCACCAAAATCACCAGCATTTGGCAAAGGAATGCAACCAA
GATGTGTGCAGACCCCAACAACTACAAGCCACTCTGGGTTTTTAACCCTC
TCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAATCAACACTGTTGGC
CAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAAACT
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