CB293712

Overview
NameCB293712
Unique NameCB293712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:588..1377. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I    +V++  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPAYEFTSDDVVVVG 274          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.431e-36
Identity = 61/101 (60.40%), Postives = 84/101 (83.17%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP+Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.870e-36
Identity = 62/101 (61.39%), Postives = 83/101 (82.18%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVP+Y F   + +++G
Sbjct:  174 LFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSGDVVVVG 274          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.442e-36
Identity = 61/101 (60.40%), Postives = 83/101 (82.18%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPIYEFTSDDMVIVG 274          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.189e-36
Identity = 61/101 (60.40%), Postives = 83/101 (82.18%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++IK   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPA  NLEVP+Y F  ++ +++G
Sbjct:  183 LFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPATLNLEVPTYEFTSDDMVIVG 283          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.439e-36
Identity = 61/101 (60.40%), Postives = 83/101 (82.18%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIR GPAP NLEVP Y F  ++ +++G
Sbjct:  174 LFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTGDDVVVVG 274          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.750e-34
Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-----GDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VF+R RT+++I +A +VD  SLRDPQ D  RV+  +WLV+VGVCTHLGCIPL        GDF GWFCPCHGSHYD +GRIRKGPAP NL VP Y+F D+  +LIG
Sbjct:   78 VFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTHLGCIPLGQKAGDPKGDFDGWFCPCHGSHYDSAGRIRKGPAPLNLPVPPYAFTDDTTVLIG 183          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.602e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +FIR RT ++I+   + D+G+L DPQ D+ RVK    EWLVV   CTHLGCIPL + GD+GGWFCPCHGS YD SGR+RKGPAP+NL VP Y F+D  K+ IG
Sbjct:   73 IFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIPLGHQGDWGGWFCPCHGSQYDASGRVRKGPAPTNLPVPPYEFVDNTKIRIG 175          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31
Identity = 58/103 (56.31%), Postives = 75/103 (72.82%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFI  RT + I  A +V +  L DP++D +RVK  +  WLV +G+CTHLGC+PL N GD+ GWFCPCHGS YD SGR+R+GPAP NL VP Y+F+ + K+ IG
Sbjct:   84 VFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTHLGCVPLANQGDYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 186          
The following BLAST results are available for this feature:
BLAST of CB293712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_GORGO1.096e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE1.431e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO1.431e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT1.870e-3661.39Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY2.442e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN3.189e-3660.40Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_CERAE5.439e-3660.40Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RHORU1.750e-3463.21Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI9.602e-3361.17Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR5.269e-3156.31Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293712 ID=CB293712; Name=CB293712; organism=Citrus sinensis; type=EST; length=790bp
AGGCCACAGGACCCCAGCTGATATGAATATGAATCAGTTACACCGGTTTC
ATGCAAAGCTGCAGCAGCACATCTATGTTATTGAGAGAAGAGAAAAAACG
GATAAGAAGCTTTCCCTTCGCCTCTTATAAAAGGGATTGTAGAAAGAAAT
CAAAGATACAGCAAGGAGCAATCGGAGCCGATCACCATTCTGTAGATGAA
CATACCCATAATAAAGAGAGCCGGAGAGCCCTCTGCATCACTATTGGTTG
AAAAAGTTTAAGCACTGCTAAAAAAGTAGTAAAACAAAAACAATGAAAAT
TTAGGTTAAAAGACAATGTGTCAAAACCAGGCAACTTATTCTGAGTTACA
GTATCCCAACCCCAATGAAAGGGTGGCAAGACACCAAGATAGACATTTAT
CTTCGACATTATCTGATAAAATATTAAAAAAAAAAGTGAGATCCCAAATA
ACCATGGATCACCGGGACAGGACGGCACACTTATCAACCAATGAGCATCT
TGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAAATTGGATGGGGCT
GGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAGAACCATGGCAAGG
GCAAAACCATCCACCAAAATCACCAGCATTTGGCAAAGGAATGCAACCAA
GATGTGTGCAGACCCCAACAACTACAAGCCACTCTGGGTTTTTAACCCTC
TCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAATCAACACTGTTGGC
CAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAAACT
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