CB293712

Overview
NameCB293712
Unique NameCB293712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 66/122 (54.10%), Postives = 82/122 (67.21%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP--------------------EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRR E+DI+LA SV LG+LRD    AE    P                    EWLV++GVCTHLGC+P+ + +GDFGGWFCPCHGSHYD +GRIRKGPAP NL++P  +F+DE  + +G
Sbjct:   72 VFIRRRDEKDIELARSVPLGALRDTS--AENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG 191          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.174e-30
Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRD-----------PQQDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFIRRRTE++I+    VDLG L D           P  D  R  +   EWLV++GVCTHLGC+P+ + AGDFGGWFCPCHGSHYD SGRIR+GPAP NL +P   FLD+  + +G
Sbjct:   76 VFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG 190          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.460e-30
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +FI  RT ++I  A +V +  L DP++D  RVK  +  WLV +G+CTHLGC+PL + G++ GWFCPCHGS YD SGR+RKGPAP NL VP Y F+ + K+ IG
Sbjct:   75 IFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVPLSHKGEYNGWFCPCHGSQYDSSGRVRKGPAPLNLAVPPYIFISDKKIRIG 177          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.608e-30
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFI  RT + I  A +V +  L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y+F+ + K+ IG
Sbjct:   75 VFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 177          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.608e-30
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            VFI  RT + I  A +V +  L DP+ D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+R+GPAP NL VP Y+F+ + K+ IG
Sbjct:   75 VFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVPLANQGEYDGWFCPCHGSQYDSSGRVRRGPAPLNLAVPPYTFISDKKIRIG 177          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.298e-29
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKN--PEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            ++I  RT++ I  A +V++ SL DPQ D  RVK+   +WLVV+G+CTHLGCIP+ + G++ G+FCPCHGS YD SGRIR+GPAP+NL VP Y F+ + K+ IG
Sbjct:   74 IYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIPIAHEGNYDGFFCPCHGSQYDSSGRIRQGPAPANLPVPPYQFVSDTKIQIG 176          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.931e-29
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +FI  RT + I  A +V +  L DP++D  RVK  +  WLV +G+CTHLGC+PL N G++ GWFCPCHGS YD SGR+RKGPA  NL VP Y F+ + K+ IG
Sbjct:   75 IFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTHLGCVPLSNQGEYNGWFCPCHGSQYDSSGRVRKGPASLNLVVPPYIFISDTKIRIG 177          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28
Identity = 63/116 (54.31%), Postives = 75/116 (64.66%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQQ------------DAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPSNLEVPSYSFLDENKMLIG 789
            +FIRRRTE DI+L  SV LG L D               D  R  +   EWLV+ GVCTHLGC+P+   +GDFGGWFCPCHGSHYD +GRIRKGPAP NL +P   F+DE  + +G
Sbjct:   72 IFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 187          
BLAST of CB293712 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.954e-13
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = -2
Query:  487 VFIRRRTEEDIKLANSVDLGSLRDPQ----QDAERVKNP------EWLVVVGVCTHLGCIPL---------PNAGDFGGWFCPCHGSHYDISGRIRKG-PAPSNLEVPSYSFLDENKMLIG 789
            V++  R+ E +   +S D   L DP     Q  +  KNP      E+LV +G+CTHLGC P            +G  GG+ CPCHGS +D++ R+ K  PAP+NL +P + +L++  +LIG
Sbjct:   82 VWVVHRSSEMLAALSSND-PKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSPTYRPEFGPDDLGSGWKGGFHCPCHGSRFDLAARVFKNVPAPTNLVIPKHVYLNDTTILIG 201          
The following BLAST results are available for this feature:
BLAST of CB293712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RHOCA1.174e-3054.10Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE1.174e-3055.65Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICPR4.460e-3054.37Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE7.608e-3055.34Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN7.608e-3055.34Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA1.298e-2955.34Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY4.931e-2954.37Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH1.099e-2854.31Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI4.954e-1337.19Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293712 ID=CB293712; Name=CB293712; organism=Citrus sinensis; type=EST; length=790bp
AGGCCACAGGACCCCAGCTGATATGAATATGAATCAGTTACACCGGTTTC
ATGCAAAGCTGCAGCAGCACATCTATGTTATTGAGAGAAGAGAAAAAACG
GATAAGAAGCTTTCCCTTCGCCTCTTATAAAAGGGATTGTAGAAAGAAAT
CAAAGATACAGCAAGGAGCAATCGGAGCCGATCACCATTCTGTAGATGAA
CATACCCATAATAAAGAGAGCCGGAGAGCCCTCTGCATCACTATTGGTTG
AAAAAGTTTAAGCACTGCTAAAAAAGTAGTAAAACAAAAACAATGAAAAT
TTAGGTTAAAAGACAATGTGTCAAAACCAGGCAACTTATTCTGAGTTACA
GTATCCCAACCCCAATGAAAGGGTGGCAAGACACCAAGATAGACATTTAT
CTTCGACATTATCTGATAAAATATTAAAAAAAAAAGTGAGATCCCAAATA
ACCATGGATCACCGGGACAGGACGGCACACTTATCAACCAATGAGCATCT
TGTTCTCATCCAAGAAGGAGTAAGAGGGTACTTCCAAATTGGATGGGGCT
GGTCCCTTGCGAATCCTGCCAGAGATATCGTAATGAGAACCATGGCAAGG
GCAAAACCATCCACCAAAATCACCAGCATTTGGCAAAGGAATGCAACCAA
GATGTGTGCAGACCCCAACAACTACAAGCCACTCTGGGTTTTTAACCCTC
TCAGCGTCTTGCTGAGGATCACGAAGAGATCCCAAATCAACACTGTTGGC
CAGCTTGATATCTTCCTCAGTCCGACGTCTGATGAAAACT
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