CB293713

Overview
NameCB293713
Unique NameCB293713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:1..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.302e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.700e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.700e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.700e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.700e-40
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.221e-40
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   +  + +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.900e-40
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D +RVK PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD S
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDAS 246          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.759e-37
Identity = 79/153 (51.63%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  358 EYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN-----AGDFGGWFCPCHGSHYD 801
            E  H    PG  S R    F++ G   V A  + L +  F+  M+ + D LA+AS EVD+S+I  G  +TV WRGKPVF+R RT+++I +A +VD  SLRDPQ D  RV+  +WLV+VGVCTHLGCIPL        GDF GWFCPCHGSHYD
Sbjct:    3 EAEHTASTPGGESSRRD--FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTHLGCIPLGQKAGDPKGDFDGWFCPCHGSHYD 153          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.394e-34
Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = 1
Query:  355 DEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            D  N  +    D SK +   F++     V A      +   + S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP++D +RVK  +  WLV +G+CTHLGC+PL N GD+ GWFCPCHGS YD S
Sbjct:    6 DTNNDNKVEFEDRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTHLGCVPLANQGDYDGWFCPCHGSQYDSS 158          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.298e-34
Identity = 74/152 (48.68%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  394 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRD-----------PQQDAERVKNP--EWLVVVGVCTHLGCIPL-PNAGDFGGWFCPCHGSHYDIS 807
            ++R F Y+   G   V A      ++     M+ S DV A+AS++VD+S +E G+ +TVKW GKPVFIRRRTE++I+    VDLG L D           P  D  R  +   EWLV++GVCTHLGC+P+   AGDFGGWFCPCHGSHYD S
Sbjct:   14 TRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGSHYDTS 162          
The following BLAST results are available for this feature:
BLAST of CB293713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_BOVIN1.302e-4052.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR1.700e-4052.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA1.700e-4052.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN1.700e-4052.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_GORGO1.700e-4052.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT2.221e-4052.17Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE2.900e-4051.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RHORU1.759e-3751.63Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR1.394e-3447.71Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE5.298e-3448.68Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293713 ID=CB293713; Name=CB293713; organism=Citrus sinensis; type=EST; length=807bp
GCCCGTGGGAGAGACCGATAACACCAATCGCCATTTCGAACACATAATCA
GAGAGAGATTTTGAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCAC
CATCCTCATCATCCTCATTGAGGCCCATGGCATCGTCTCGGAATATAATT
AACGGCGCCGGTTCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGG
CTTCTATGGCTCCGGATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAG
CTTTTTCTTCTGAGTCACTGACACCAAGAAATGAAGAAAGCCTGGTTCCA
GGTGTTCCAGCAACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGT
ATATGATGAGTACAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGC
GGGCATTTGCCTACTTTGTCCTGACTGGTGGTAGGTTTGTGTACGCTTCA
CTCATCCGTCTACTTATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAA
GGATGTTCTTGCTATGGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGC
CAGGCAGCACAGTGACTGTTAAGTGGCGAGGCAAGCCAGTTTTCATCAGA
CGTCGGACTGAGGAAGATATCAAGCTGGCCAACAGTGTTGATTTGGGATC
TCTTCGTGATCCTCAGCAAGACGCTGAGAGGGTTAAAAACCCAGAGTGGC
TTGTAGTTGTTGGGGTCTGCACACATCTTGGTTGCATTCCTTTGCCAAAT
GCTGGTGATTTTGGTGGATGGTTTTGCCCTTGCCATGGTTCTCATTACGA
TATCTCT
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