CB293714

Overview
NameCB293714
Unique NameCB293714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length186
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:559..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.655e-12
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +E+ R+LQISGER++E+E+KN  WHRVE           LP+N KV  VKASMENGVL+V
Sbjct:   76 IEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTV 135          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.655e-12
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEE R+LQISGER++E+E+KN  WHR+E           LP+N K++ VKASMENGVL+V
Sbjct:   76 VEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTV 135          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.655e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+GR+LQISGER  EQEEK+  WHRVE           LP+N K++ VKA MENGVL+V
Sbjct:   74 VEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.655e-12
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            V++G ILQISGERS EQEEK+  WHRVE           LP+N K E +KASMENGVL+V
Sbjct:   81 VDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTV 140          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.691e-12
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEE R+LQISGER+ME+E+KN  W RVE           LP+N K++ VKASMENGVL+V
Sbjct:   76 VEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTV 135          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.691e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEEG +L ISG+RS E+E+KN  WHRVE           LP+N KV+ VKASMENGVL+V
Sbjct:   71 VEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTV 130          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +E+ R+LQISGER++E+E+KN  WHRV+           LP+N KVE VKA MENGVL+V
Sbjct:   76 IEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTV 135          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +E+ R+LQISGERS+E+E+KN  WHR+E           LP+N K++ VKA+MENGVL+V
Sbjct:   80 IEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTV 139          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +E+ R+LQISGER++E+E+KN  WHRVE           LP+N K++ VKA+MENGVL+V
Sbjct:   65 IEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTV 124          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.483e-11
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+  +LQISGERS E EEKN  WHRVE           LP+N K+E VKA+MENGVL+V
Sbjct:   81 VEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTV 140          
The following BLAST results are available for this feature:
BLAST of CB293714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
HSP14_SOYBN6.655e-1256.6717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC6.655e-1256.6717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_HELAN6.655e-1258.3317.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS177_ORYSJ6.655e-1260.0017.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE8.691e-1258.3317.7 kDa class I heat shock protein OS=Solanum per... [more]
HS16C_ORYSJ8.691e-1258.3316.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP15_SOYBN1.483e-1155.0017.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.483e-1153.3318.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA1.483e-1153.3318.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ARATH1.483e-1158.3318.1 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293714 ID=CB293714; Name=CB293714; organism=Citrus sinensis; type=EST; length=186bp
CAGGCACTGAGAGCACACCATTCTCCATGCTGGCCTTAACCGGCTCCACC
TTACCATTGTCCGGCAACCTGAACCTCCTCAAGAACTAGCCACTGCTCCT
CTCGACGCGATGCCACATGACATTCTTCTCTTCCTGCTCCATGCTCCGCT
CCCCGCTTATCTGCAGAATCCTGCCCTCTTCGACCT
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