CB293714

Overview
NameCB293714
Unique NameCB293714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length186
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:559..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.936e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +EEG++LQISGER+ E+EEKN  WHRVE           LP+N KV+ VKA+M NGV++V
Sbjct:   79 LEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTV 138          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.529e-11
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+G +L+ISG+R+ E+EEKN  WHRVE           LP+N KV+ VKA MENGVL+V
Sbjct:   84 VEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTV 143          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.529e-11
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+G +LQISGER  EQEEK   WHRVE           LP+N K E +KASMENGVL+V
Sbjct:   76 VEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTV 135          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.529e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEEG +L ISG+RS E+E+KN  WHRVE           LP+N KV+ VKA MENGVL+V
Sbjct:   72 VEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTV 131          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.314e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -3
Query:    5 ILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 169
            ILQISGER++E+E+KN  WHRVE           LPDN KV+ VKASMENGVL+V
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTV 55          
BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = -3
Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEEG +L ISG+RS E+E+KN  WHRVE           LP+N KV+ VKA +ENGVL+V
Sbjct:   72 VEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTV 131          
The following BLAST results are available for this feature:
BLAST of CB293714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
HSP11_DAUCA1.936e-1155.0017.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_CHERU2.529e-1155.0018.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS174_ORYSJ2.529e-1158.3317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.529e-1156.6716.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP12_SOYBN4.314e-1161.82Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS16A_ORYSJ5.634e-1155.0016.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293714 ID=CB293714; Name=CB293714; organism=Citrus sinensis; type=EST; length=186bp
CAGGCACTGAGAGCACACCATTCTCCATGCTGGCCTTAACCGGCTCCACC
TTACCATTGTCCGGCAACCTGAACCTCCTCAAGAACTAGCCACTGCTCCT
CTCGACGCGATGCCACATGACATTCTTCTCTTCCTGCTCCATGCTCCGCT
CCCCGCTTATCTGCAGAATCCTGCCCTCTTCGACCT
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