CB293718

Overview
NameCB293718
Unique NameCB293718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:664..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.570e-32
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGP+E LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  202 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.051e-32
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAW++ATNFVPGK
Sbjct:   44 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.051e-32
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAW++ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.051e-32
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.051e-32
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAW++ATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.051e-32
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  194 SFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.679e-32
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAFAEL+VKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.498e-32
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQA+VTGKGPLE LADHL DPV+NNAW++ATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.498e-32
Identity = 65/73 (89.04%), Postives = 69/73 (94.52%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAFAELKVKE+KNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.498e-32
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = -2
Query:   38 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 250
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  195 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CB293718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2B_PINSY1.570e-3290.41Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2D_SOLLC2.051e-3290.41Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB23_PETSP2.051e-3290.41Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_ORYSJ2.051e-3290.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_TOBAC2.051e-3290.41Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_SINAL2.051e-3291.78Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PETSP2.679e-3290.41Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL3.498e-3289.04Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_CUCSA3.498e-3289.04Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_ORYSJ3.498e-3291.55Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293718 ID=CB293718; Name=CB293718; organism=Citrus sinensis; type=EST; length=263bp
AACCCACTAGAGAAAAACTCTTATCAACCAAAACTCACTTTCCGGGGACA
AAGTTGGTGGCGAAGGCCCAGGCATTGTTATGGACAGGGTCATCCAAGTG
GTCGGCCAATTTCTCTAAGGGACCCTTGCCGGTGACAATGGCCTGAACAA
ATAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTA
ACCTTGAGCTCAGCAAAAGCCTCCGGGTCTTCAGCCAAACCCAATGGATC
ACAGCTCCTCGTG
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