CB293718

Overview
NameCB293718
Unique NameCB293718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:664..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.598e-31
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = -2
Query:   38 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 250
            DPLGLA+DP+AFA++KVKEIKNGRLAMFSMFG FVQAIVTGKGP+E LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  208 DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.598e-31
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = -2
Query:   38 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 250
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGP+E L DH+ DPV NNAWAFATNFVPGK
Sbjct:  195 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.125e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKE KNGRLAMFSMFG F+QAIVTGKGPLE LADHL DPV+NNAW++ATNFVP K
Sbjct:  195 SFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.470e-30
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = -2
Query:   38 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 250
            DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGP+E L DH+ DPV NNAWA+ATNFVPGK
Sbjct:  195 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.470e-30
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = -2
Query:   38 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 250
            DPLGLA+DP+AFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGP+E L DHL DPV NNAWA+ATNFVPGK
Sbjct:  195 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.920e-30
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPL    DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.920e-30
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAE PEAFAELKVKE+KNGRLAMFSMFG FV AIVTGKGPLE LADHL DPV+NNAW++ATNFVPGK
Sbjct:  156 SFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.274e-30
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAFAELKVKE+KNGRLAMFSMFG FVQAIVTGKGP+E L+DHL DP  NNAWA+ATNF PGK
Sbjct:  193 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.274e-30
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAE P+AFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADH+ DPV+NNAW  ATNFVPGK
Sbjct:  194 SFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.277e-30
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = -2
Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAF ELKVKE+K GRLAM SMFG FVQAIVTGKGPLE LADH+ DPV+NNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CB293718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2A_PYRPY6.598e-3185.92Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB26_PETSP6.598e-3188.73Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_PETSP1.125e-3086.30Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_TOBAC1.470e-3087.32Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_GOSHI1.470e-3087.32Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_RAPSA1.920e-3087.67Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PEA1.920e-3086.30Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_POLMU3.274e-3083.56Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_WHEAT3.274e-3086.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE4.277e-3083.56Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293718 ID=CB293718; Name=CB293718; organism=Citrus sinensis; type=EST; length=263bp
AACCCACTAGAGAAAAACTCTTATCAACCAAAACTCACTTTCCGGGGACA
AAGTTGGTGGCGAAGGCCCAGGCATTGTTATGGACAGGGTCATCCAAGTG
GTCGGCCAATTTCTCTAAGGGACCCTTGCCGGTGACAATGGCCTGAACAA
ATAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTA
ACCTTGAGCTCAGCAAAAGCCTCCGGGTCTTCAGCCAAACCCAATGGATC
ACAGCTCCTCGTG
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