CB293718
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 9.228e-25 Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = -2 Query: 44 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVP 256 S DPLGLA+DP+ FAELKVKEIKNGRLA FSMFG FVQAIVTGKGP++ L DHL +P NNA+AFAT F P Sbjct: 181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.507e-24 Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = -2 Query: 44 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVP 250 DPLGLA+DP+ FAELKVKEIKNGRLAMF+ G FVQAIVTGKGP+E L DHL +P NNA+A+AT F P Sbjct: 204 DPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.020e-23 Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = -2 Query: 41 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPG 250 DPLGLA+DP+ FAELKVKEIKNGRLAMFS G FVQAIVTGKGP++ L DHL DP N A+A AT F PG Sbjct: 183 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.312e-22 Identity = 54/72 (75.00%), Postives = 58/72 (80.56%), Query Frame = -2 Query: 41 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPG 256 S D LGLAED EAFAELKVKE+KNGRLAMFSMFG FVQAIV+ K LE LADHL V+NNA + TNFVPG Sbjct: 196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.405e-18 Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = -2 Query: 74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNN 250 DPLGLA+DPE A LKVKEIKNGRLAMF+M G F+QA VTG+GP+E LA HL DP NN Sbjct: 207 DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.405e-18 Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = -2 Query: 44 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDP-VHNNAWAFATNFVP 250 DPLGLA+DP+ F ELKVKEIKNGRLAM M G + QAIVTG+GP+E HL DP HN A T F P Sbjct: 52 DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14 Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = -2 Query: 74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNN 250 +PLG +D ++ ELK+KEIKNGRLAM ++ G F+QA+VTG GP + L DHL DPV+NN Sbjct: 207 NPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.571e-14 Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = -2 Query: 74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNN 250 +PLG +D ++ ELK+KE+KNGRLAM ++ G F+Q +VTG GP + L DH+ DPV+NN Sbjct: 209 NPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13 Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = -2 Query: 74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFV-QAIVTGKGPLEKLADHLDDPVHNN 250 DPLG ++DP F ELK+KEIKNGRLAM + G V Q+ G GPLE LA HL DP HNN Sbjct: 173 DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13 Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = -2 Query: 74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFV-QAIVTGKGPLEKLADHLDDPVHNN 250 DPLG ++DP F ELKVKEIKNGRLA+ ++ G V Q+ G GPLE LA HL DP HNN Sbjct: 174 DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233 The following BLAST results are available for this feature:
BLAST of CB293718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293718 ID=CB293718; Name=CB293718; organism=Citrus sinensis; type=EST; length=263bpback to top |