CB293718

Overview
NameCB293718
Unique NameCB293718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length263
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.228e-25
Identity = 54/71 (76.06%), Postives = 60/71 (84.51%), Query Frame = -2
Query:   44 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVP 256
            S DPLGLA+DP+ FAELKVKEIKNGRLA FSMFG FVQAIVTGKGP++ L DHL +P  NNA+AFAT F P
Sbjct:  181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.507e-24
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = -2
Query:   44 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVP 250
            DPLGLA+DP+ FAELKVKEIKNGRLAMF+  G FVQAIVTGKGP+E L DHL +P  NNA+A+AT F P
Sbjct:  204 DPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.020e-23
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = -2
Query:   41 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPG 250
            DPLGLA+DP+ FAELKVKEIKNGRLAMFS  G FVQAIVTGKGP++ L DHL DP  N A+A AT F PG
Sbjct:  183 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.312e-22
Identity = 54/72 (75.00%), Postives = 58/72 (80.56%), Query Frame = -2
Query:   41 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPG 256
            S D LGLAED EAFAELKVKE+KNGRLAMFSMFG FVQAIV+ K  LE LADHL   V+NNA +  TNFVPG
Sbjct:  196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.405e-18
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = -2
Query:   74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNN 250
            DPLGLA+DPE  A LKVKEIKNGRLAMF+M G F+QA VTG+GP+E LA HL DP  NN
Sbjct:  207 DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.405e-18
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = -2
Query:   44 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDP-VHNNAWAFATNFVP 250
            DPLGLA+DP+ F ELKVKEIKNGRLAM  M G + QAIVTG+GP+E    HL DP  HN   A  T F P
Sbjct:   52 DPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = -2
Query:   74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNN 250
            +PLG  +D ++  ELK+KEIKNGRLAM ++ G F+QA+VTG GP + L DHL DPV+NN
Sbjct:  207 NPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.571e-14
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = -2
Query:   74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNN 250
            +PLG  +D ++  ELK+KE+KNGRLAM ++ G F+Q +VTG GP + L DH+ DPV+NN
Sbjct:  209 NPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = -2
Query:   74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFV-QAIVTGKGPLEKLADHLDDPVHNN 250
            DPLG ++DP  F ELK+KEIKNGRLAM +  G  V Q+   G GPLE LA HL DP HNN
Sbjct:  173 DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = -2
Query:   74 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFV-QAIVTGKGPLEKLADHLDDPVHNN 250
            DPLG ++DP  F ELKVKEIKNGRLA+ ++ G  V Q+   G GPLE LA HL DP HNN
Sbjct:  174 DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CB293718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_CHLRE9.228e-2576.06Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA3.507e-2473.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.020e-2374.29Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO7.312e-2275.00Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH6.405e-1872.88Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR6.405e-1862.86Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC1.131e-1459.32Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA9.571e-1454.24Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU4.750e-1361.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC4.750e-1361.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293718 ID=CB293718; Name=CB293718; organism=Citrus sinensis; type=EST; length=263bp
AACCCACTAGAGAAAAACTCTTATCAACCAAAACTCACTTTCCGGGGACA
AAGTTGGTGGCGAAGGCCCAGGCATTGTTATGGACAGGGTCATCCAAGTG
GTCGGCCAATTTCTCTAAGGGACCCTTGCCGGTGACAATGGCCTGAACAA
ATAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTA
ACCTTGAGCTCAGCAAAAGCCTCCGGGTCTTCAGCCAAACCCAATGGATC
ACAGCTCCTCGTG
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