CB293719 | Citrus Genome Database

Overview


Name	CB293719
Unique Name	CB293719
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	345

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:663..1007.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.899e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKE+KNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.092e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.650e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   44 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.650e-36
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.650e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.650e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.685e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.685e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.685e-36
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.685e-36
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 3

Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            +FDPLGLADDP+AFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  206 NFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

The following BLAST results are available for this feature:

BLAST of CB293719 vs. ExPASy Swiss-Prot

BLAST of CB293719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB22_PEA	3.899e-36	95.89	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB2B_PINSY	5.092e-36	95.89	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB2D_SOLLC	6.650e-36	95.89	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB27_TOBAC	6.650e-36	95.89	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB23_PETSP	6.650e-36	95.89	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB21_TOBAC	6.650e-36	95.89	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB2C_SOLLC	8.685e-36	95.89	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2B_SOLLC	8.685e-36	95.89	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB2A_SOLLC	8.685e-36	95.89	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2A_PINSY	8.685e-36	94.52	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS01_06cc03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB293719 ID=CB293719; Name=CB293719; organism=Citrus sinensis; type=EST; length=345bp
GCCCTAGGAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGATGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCC
TACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTT
TTCTCTTTTCCGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGG
AAGCTTTAATTTGAGTTGTGATTATTTATAAAAAAAAAAAAAAAA