CB293733

Overview
NameCB293733
Unique NameCB293733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 91/206 (44.17%), Postives = 125/206 (60.68%), Query Frame = 3
Query:   48 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ +  QR+G  GSVF++    R GPAR+   +  E +N  L GV+ +++H+PGRGAPLA V F         K   +  EG+  GQ +Y G KA  V+G+++ + ++PEG +V N+E   GD G  AR SG YA+V++H+  N  T I+LPS   K V S  RA IG VA GGR EKP+LKAG  +H  + K   +P VRG AM
Sbjct:    1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFE-----DGTKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAM 199          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.417e-37
Identity = 91/206 (44.17%), Postives = 122/206 (59.22%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ +  QR+G GS +++S       PAR+  L        L+G + E++HDPGR  PLA +        ++  E ++ AAEGMY GQ +  G  A  V GN+LP+  IPEG  V N+E   GD G   R  G YA+++  +   + T I+LPSG  K VP+  RA IG VAG GR EKPLLKAG AY+K+  K + WP+VRGVAM
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLT----PVTLRGRVVELVHDPGRWVPLAHIVL------ENGDEFYIPAAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAM 194          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.033e-37
Identity = 86/205 (41.95%), Postives = 122/205 (59.51%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ +  QR+G G+  F++ +H  +G  R+  L+  +    L G + EI+HDPGR AP+ARV F +       ++L +A EG+  G+ +  G  A + +GN LPL  IPEG+ V ++E   GD G + R  G YA+V+S   + D   ++LPSG  K     CRA IG VAGGGR EKP++KAG AY+  K +   WPK RGV M
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGM-----EKLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKM 197          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 88/206 (42.72%), Postives = 121/206 (58.74%), Query Frame = 3
Query:   48 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ I  QR G  GS F+S +  R  P R+      +    ++G+I E++H  G  AP   V        ++ +E+++ A EG+Y G+ +  G  A +  GNV+P+  IPEG +VCN+E  VGD G +AR SG Y VV+ H   + TT ++LPSG    V S  RA IG VAGGGR EKP +KAGN YH+ + K   +PKVRG AM
Sbjct:    1 MGKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVL------ENGEEMYLPAVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAM 198          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.016e-35
Identity = 87/205 (42.44%), Postives = 118/205 (57.56%), Query Frame = 3
Query:   48 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ I  QR+G  GS F+S +  R+GP R+  L    R     G + +IIH PG  AP+A++   +   +     L  AAEG+Y GQ +  G  A+   GNV+ L   PEG +V NVE   GD G FAR  G YAVV+   P+ + T ++LPSG    V +  RA +G VAGGGR EKP++KAG  Y++ + K   +P VRG AM
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGR-----GYVVDIIHVPGLNAPVAKIRLENGLEF-----LNYAAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAM 195          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.326e-35
Identity = 81/206 (39.32%), Postives = 123/206 (59.71%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ + +Q +G G+  +++ +H  K   R   +D    N  L+G + +I HDP R AP+A+V F      ++ +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CN+E    D G F R SG YA V++H P    T + +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK K +   +P+V  VAM
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENTSLQGEVIDIEHDPARSAPIAKVAF------ENGEELFLLASEGVAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEPTR--TAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAM 195          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 78/205 (38.05%), Postives = 121/205 (59.02%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ I +Q +G G+  +++ +H  K   R   +D    N  ++G +  + HDP R AP+A+V F        ++ L +A+EG+  G  + CG  A +  GN++P+  +PEG  +CN+E    D G F R SG YA V++H  +++ T + +PSG  K +   CRA++G VAGGGR ++P LKAG  YHK K +   +P+V GVAM
Sbjct:    1 MGKRIISQNRGRGTPTYRAPSHKYKAELRHPRVD---ENTSIQGKVINLEHDPARSAPIAKVVFE-----TGEERLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAM 195          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 80/206 (38.83%), Postives = 121/206 (58.74%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ + +Q +G G+  +++ +H  K   R   +D    N  L+G +  I HDP R AP+A+V F      ++ +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CNVE    D G F R SG YA V++H  +   T + +PSG  K +   CRA++G VAG GR ++P LKAG  YHK K +   +P+V  VAM
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAF------ENGEELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH--EATRTAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAM 195          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 85/205 (41.46%), Postives = 119/205 (58.05%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ +  QR G GS  F+S +  R G  R+ ++      G+L G + +I+H+PG  AP+A +   +  ++  Q     A +G+   Q +  G+ + +  GNV+ +   PEG +VCNVE + GD G +AR +G YAVV+  +   D   IKLPS   K V +  RA +G VAGGG  EKPLLKAG  Y K+KVK   WP VRGVAM
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAM 193          
BLAST of CB293733 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 85/205 (41.46%), Postives = 119/205 (58.05%), Query Frame = 3
Query:   48 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFKVKRNCWPKVRGVAM 659
            MG+ +  QR G GS  F+S +  R G  R+ ++      G+L G + +I+H+PG  AP+A +   +  ++  Q     A +G+   Q +  G+ + +  GNV+ +   PEG +VCNVE + GD G +AR +G YAVV+  +   D   IKLPS   K V +  RA +G VAGGG  EKPLLKAG  Y K+KVK   WP VRGVAM
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAM 193          
The following BLAST results are available for this feature:
BLAST of CB293733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THEPD2.417e-3744.1750S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_HYPBU2.417e-3744.1750S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_THEON7.033e-3741.9550S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_CALMQ1.567e-3642.7250S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_THENV1.016e-3542.4450S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_METMA1.326e-3539.3250S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_METBF8.598e-3538.0550S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_METAC4.267e-3438.8350S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_SULIY5.573e-3441.4650S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM5.573e-3441.4650S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06cd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293733 ID=CB293733; Name=CB293733; organism=Citrus sinensis; type=EST; length=712bp
GCCCTTGGCCAAAACCCTAGACAGAGAGTCACGGCGAGTCGATTCAAATG
GGACGAGTCATTAGAGCACAGCGTAAGGGAGCGGGCTCCGTCTTCAAGTC
GCACACACACCACCGCAAGGGCCCGGCCAGGTTCCGCTCGCTTGATTTCG
GGGAACGCAACGGCTACCTGAAGGGAGTCATAACGGAGATCATCCATGAT
CCTGGCCGCGGCGCCCCGCTGGCCCGGGTCACGTTTCGTCACCCGTTTAG
GTACCAGCACCAGAAGGAGCTGTTCGTAGCGGCTGAAGGGATGTACACTG
GGCAGTTCGTGTACTGCGGAAGGAAGGCGACTTTGGTTGTCGGAAATGTG
TTGCCCTTGCGATCGATCCCTGAAGGAGCGGTGGTTTGTAATGTGGAGCA
TCACGTGGGTGATCGCGGTGTCTTTGCCAGATGTTCGGGTGATTATGCTG
TTGTCATTAGTCATAATCCAGATAACGACACTACTCGGATTAAGCTCCCA
TCTGGTGCCAAGAAGATTGTGCCGAGTGGGTGCCGTGCTATGATTGGTCA
AGTTGCCGGTGGAGGCAGAACAGAGAAGCCATTGTTGAAGGCAGGAAATG
CTTATCACAAGTTCAAAGTGAAGAGGAACTGCTGGCCCAAGGTCCGTGGT
GTTGCCATGAACCCTGGTGAGCATCCCCATGGTGGTGGTAACCACCAGCA
CATTGGGCATGC
back to top