CB293760

Overview
NameCB293760
Unique NameCB293760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.600e-13
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = -1
Query:  569 NDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTL 826
            + EKA+   +A N P+++A++    +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L
Sbjct:  247 SSEKAMAAWLAKNGPIAIALDAS--SFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL 331          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.314e-13
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  584 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYG-----TENGADYWIVKNSWGSSWGEAGYIRMERN 853
            + DY D+P  + + +    A  P+S AI+     F+ Y+ GI+     +S  +DHGV  VGYG     TEN   YWI+KNSWG+ WG  GYI+M ++
Sbjct:   43 VTDYWDIPSKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSEDVDHGVLVVGYGADGTETEN-KKYWIIKNSWGTDWGMDGYIKMAKD 138          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = -1
Query:  581 YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 844
            Y  V +N+EK      A  P+ +AI+   +    Y  G+ +      L+H V  VGYG ENG  YW+ KN+WG  WGE GY R+ +NV
Sbjct:  255 YRYVMVNEEKLKDLLRAVGPIPMAIDAADIVN--YYRGVISSCENNGLNHAVLLVGYGVENGVPYWVFKNTWGDDWGENGYFRVRQNV 340          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = -1
Query:  533 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGT-----------------------EN--GAD------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 787
            PV++A+ G    F LY  G+F G C   L+H V  VGYG                        EN  G D      YWIV+NSWG +WGE GYIR++RN AG   G CG+  +  +
Sbjct:  390 PVTIAV-GASEDFVLYSGGVFDGECNPELNHSVLLVGYGQVKKSLAFEDSHSNVDSNLIKKYKENIKGDDDDDIIYYWIVRNSWGPNWGEGGYIRIKRNKAGD-DGFCGVGSDVFF 503          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = -1
Query:  533 IDDYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 853
            I DY ++P N E  L  AVA+  PVS AI+    +F+ Y  GI+    C +  ++H V  VGYG+E    +G +YW++KNSWG  WG  GY++    +A      CGIA  ASY
Sbjct:  222 ITDYVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQ----IAKDHNNHCGIASLASY 330          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = -1
Query:  536 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 853
            I  + ++P ++ +       N PV+VA++    ++  Y  G+ T      LDHGV  VGY       YWI+KNSW + WGE GYIR+ +      + +C +  EAS
Sbjct:  234 ITGHVELPQDEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG-----SNQCLVKEEAS 332          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 43/110 (39.09%), Postives = 54/110 (49.09%), Query Frame = -1
Query:  536 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI---FTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 853
            I+D  ++  N+ K         P+SVAI   GM F  Y  GI   F   C    +DH V  VGYG  +   YW +KNSWGS WGE GY  + R      +G CG+   AS
Sbjct:  355 INDSVELSRNENKIAAWLAQKGPISVAINAFGMQF--YRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSNIPYWAIKNSWGSDWGEEGYYYLYRG-----SGACGVNTMAS 457          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = -1
Query:  593 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 853
            I  +  +P ++E+  +      PV+VA++     +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  239 ITGFLSLPHDEERIAEWVEKRGPVAVAVDA--TTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = -1
Query:  593 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 853
            I  +  +P ++E+  +      PV+VA++     +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  239 ITGFLSLPHDEERIAEWVEKRGPVAVAVDA--TTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = -1
Query:  542 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 787
            P+ VAI+   +    YE GI        L+H V  VGYG EN   YWI+KNSWG+ WGE G+ ++++NV       CGI  E
Sbjct:  241 PIPVAIDASDILN--YEQGIIKYCANNGLNHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKIQQNV-----NACGIKNE 315          
The following BLAST results are available for this feature:
BLAST of CB293760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
CYSP2_LEIPI5.600e-1340.23Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CATL1_FELCA7.314e-1340.21Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
CATV_NPVLD1.629e-1239.77Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CYSP_PLAVN2.128e-1237.93Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CATJ_MOUSE2.128e-1241.23Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CYSP_TRYCR3.630e-1233.96Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
CATF_MOUSE3.630e-1239.09Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
LMCPA_LEIME4.741e-1241.38Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI4.741e-1241.38Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATV_NPVEP4.741e-1242.68Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ce11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ce11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293760 ID=CB293760; Name=CB293760; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTACCCACCAACGTGCGAATAAATATTTAACAGACCA
TCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCATTAGAATGAACT
AAGGCCGGGGAGAAACTCATTCACAAGCACAAATATTTTCATCCTCCCTT
CGGCCTTCCACTGCTCTTACGGTGCCAACTATAATTAAACACTGCTACTT
CCACCTTGATTTCCATGAGCCCAGGAAGGTTTAGCAGGGGAGCGTCCTAA
TGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCAC
GAACATTACAGATGGGATAGTCATGTGGGCAGCACCTATAGTGGTCATCA
CAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTT
ACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAAT
AATTGTCACACACACCAGGAGGCTTTGTTGGAGATGGAGGGGACGGTCCA
GGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGC
AATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAA
TATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAG
TAATCAGCTCCATTTTCTGTGCCATATCCAACAGCAGTAACACCATGGTC
CAGAGATGTCCCACATCTTCCCGTAAATATACCCGATTCATATAACTGGA
ATGCCATGCCACCTCCTTCAATGGCAACACTCACGGGTTGATTTGCAACT
GCCTTTTGCAAAGCTTTCTCGTCATTTAGGGGAACATCTTCATAGTCATC
AAT
back to top