CB293760

Overview
NameCB293760
Unique NameCB293760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = -1
Query:  542 YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 844
            Y  V L +EK         P+ VAI+   +    Y+ GI        L+H V  VGYG ENG  +WI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  223 YRYVTLFEEKLKDLLRIVGPIPVAIDASDIVG--YKRGIIRYCENHGLNHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRVQQNI-----NACGIKNE 316          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = -1
Query:  551 LNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 829
            L  EK L++ +  + PVSVAI+   +    Y+SG+    C     L+HGV  VGYG EN   YW +KNSWGS WGE G+ R++R+V       CGI
Sbjct:  245 LRSEKKLRQVLHEKGPVSVAIDVVDLTN--YKSGV-AKHCSVDHGLNHGVLLVGYGQENDVKYWTLKNSWGSDWGEQGFFRIKRDV-----NSCGI 332          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  536 YEDVPLNDEKALQK-AVANQPVSVAIEGGGMAFQLYESGI---FTGRCGT-SLDHGVTAVGYGTENGAD------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 844
            + D+P  +E A+Q+  +AN P+S+ I    M F  Y  G+   +   C   +LDHGV  VGYG  +  +      YWIVKNSWG  WGE GY R+ R         CG++  A+
Sbjct:  503 FVDLPKGNETAMQEWLLANGPISIGINANAMQF--YRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRG-----DNTCGVSEMAT 609          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  542 NDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 826
            N+ K  +  V N P+SVAI+   +    Y++GI    C  +  L+H V  VGYG +N   YWI+KNSWG+ WGE GY R++R+        CG+  E
Sbjct:  238 NENKLRELLVVNGPISVAIDVSDLIN--YKAGI-ADICENNEGLNHAVLLVGYGVKNDVPYWILKNSWGAEWGEEGYFRVQRD-----KNSCGMMNE 326          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 51/113 (45.13%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  533 YEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCG-TSLDHGVTAVGYGTENGAD-----YWIVKN-SWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 844
            + D+P + EK L KAVA   P+SVA     ++FQ Y+ GI F  RC    LDH +  VGY  E GAD     YW+VKN S G +WG  GYI+M ++        CGIA  ASY
Sbjct:  168 FVDIP-SQEKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRCDPEGLDHAMLLVGYSYE-GADSDNNKYWLVKNSSEGKNWGMDGYIKMAKD----RRNNCGIATAASY 274          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = -1
Query:  542 YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 844
            Y  + + +EK      +  P+ VAI+   +    Y+ GI        L+H V  VGY  ENG  +WI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  223 YRYITVFEEKLKDLLRSVGPIPVAIDASDIVN--YKRGIMKYCANHGLNHAVLLVGYAVENGVPFWILKNTWGADWGEQGYFRVQQNI-----NACGIQNE 316          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = -1
Query:  548 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-----GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIA 853
            I ++  +P N+       V+  P+++A +   + +Q Y  G+F   C   SLDHG+  VGY  +N        YWIVKNSWG+ WGE GYI + R         CG++
Sbjct:  235 ISNFTMIPKNETVMAGYIVSTGPLAIAADA--VEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRG-----KNTCGVS 335          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 38/101 (37.62%), Postives = 53/101 (52.48%), Query Frame = -1
Query:  542 YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 844
            Y  V LN+E+         P+++A++   +    Y  GI +      L+H V  VGYG EN   YWI+KNSWGS +GE GY+R+ R V       CG+  E
Sbjct:  236 YRYVILNEERLEDLLRYVGPIAIAVDAVDLTD--YYGGIVSFCENNGLNHAVLLVGYGVENNVPYWIIKNSWGSDYGEDGYVRVRRGV-----NSCGMINE 329          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.353e-11
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = -1
Query:  542 LNDEKALQKAV-ANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 829
            + DE  L++ V    PV++A++   M    Y  GI        L+H V  +G+G EN   YWI+KNSWG  WGE G++R+ RNV       CG+  E
Sbjct:  270 IRDENKLKELVYTTGPVAIAVDA--MDIINYRRGILNQCHIYDLNHAVLLIGWGIENNVPYWIIKNSWGEDWGENGFLRVRRNV-----NACGLLNE 359          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 41/110 (37.27%), Postives = 54/110 (49.09%), Query Frame = -1
Query:  536 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGI---FTGRCGTSL-DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 853
            I+D  ++  N++K         P+SVAI   GM F  Y  GI       C   L DH V  VGYG  +   +W +KNSWG+ WGE GY  + R      +G CG+   AS
Sbjct:  377 INDSVELSQNEQKLAAWLAKRGPISVAINAFGMQF--YRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRG-----SGACGVNTMAS 479          
The following BLAST results are available for this feature:
BLAST of CB293760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
CATV_NPVAP6.191e-1238.61Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATV_GVXN6.191e-1243.75Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CPR1_DROME1.056e-1137.72Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATV_GVCP1.056e-1140.21Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATL6_HUMAN1.056e-1145.13Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATV_NPVCF1.379e-1135.64Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CYSP1_DICDI1.801e-1135.19Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATV_NPVSE1.801e-1137.62Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVHZ2.353e-1138.14Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATF_HUMAN3.073e-1137.27Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ce11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ce11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293760 ID=CB293760; Name=CB293760; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTACCCACCAACGTGCGAATAAATATTTAACAGACCA
TCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCATTAGAATGAACT
AAGGCCGGGGAGAAACTCATTCACAAGCACAAATATTTTCATCCTCCCTT
CGGCCTTCCACTGCTCTTACGGTGCCAACTATAATTAAACACTGCTACTT
CCACCTTGATTTCCATGAGCCCAGGAAGGTTTAGCAGGGGAGCGTCCTAA
TGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCAC
GAACATTACAGATGGGATAGTCATGTGGGCAGCACCTATAGTGGTCATCA
CAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTT
ACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAAT
AATTGTCACACACACCAGGAGGCTTTGTTGGAGATGGAGGGGACGGTCCA
GGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGC
AATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAA
TATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAG
TAATCAGCTCCATTTTCTGTGCCATATCCAACAGCAGTAACACCATGGTC
CAGAGATGTCCCACATCTTCCCGTAAATATACCCGATTCATATAACTGGA
ATGCCATGCCACCTCCTTCAATGGCAACACTCACGGGTTGATTTGCAACT
GCCTTTTGCAAAGCTTTCTCGTCATTTAGGGGAACATCTTCATAGTCATC
AAT
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