CB293760

Overview
NameCB293760
Unique NameCB293760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:323..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = -1
Query:  542 KALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 817
            K L +AV   P+ VAI+   +    Y  GI        L+H V  VGY  EN   YWI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  234 KDLLRAVG--PIPVAIDASDIVN--YRRGIMRQCANHGLNHAVLLVGYAVENNIPYWILKNTWGTDWGEDGYFRVQQNI-----NACGIRNE 316          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = -1
Query:  542 YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 844
            Y  + + +EK         P+ VAI+   +    Y  GI         +H V  VGYG EN   YWI+KN+WG  WGE GY R+++N+       CGI  E
Sbjct:  223 YRYIAVFEEKLKDLLRIVGPIPVAIDASDIVN--YRRGIMRYCSNYGFNHAVLLVGYGVENNVPYWILKNTWGEDWGEQGYFRVQQNI-----NACGIRNE 316          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = -1
Query:  542 YEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 844
            Y  V + +EK         P+ VAI+   +    Y+ G+        L+H V  VGY  ENG  +WI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  223 YRYVLMFEEKLKDLLRIVGPLPVAIDASDIVN--YKRGVIRYCANHGLNHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRVQQNI-----NACGIQNE 316          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 41/94 (43.62%), Postives = 52/94 (55.32%), Query Frame = -1
Query:  551 DEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 823
            D  A+ KA+A   P+  A       F  YESG++    G     H V  VGYGT++ G DYWI+KNSWG  WGE GY R+ R     +T +CGI
Sbjct:  201 DAPAIMKALATGGPLQTAFTVYS-DFMYYESGVYQHTYGRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIR-----MTNECGI 288          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = -1
Query:  533 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIF-TGRCGTSL-DHGVTAVGYG----TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 853
            I  +E VP N++  +    +  P+SVAI+    +F  Y+ GI+    C + +  H +  VGYG      +G  YW+VKNS G+ WG  GY+++ R+        CGIA  A Y
Sbjct:  222 ITGFEFVPKNEDALMNAVASIGPISVAIDARHASFLFYKRGIYYEPNCSSCVVTHSMLLVGYGFTGRESDGRKYWLVKNSMGTQWGNKGYMKISRDKG----NHCGIATYALY 330          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  581 YEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCG-TSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNV 844
            Y+D  L D  A+ KA++   P+ VA       F  YESG++    G     H V  VGYGT++ G DYWI+KNSWG  WGE GY RM R +
Sbjct:  196 YKDYGL-DIPAMMKALSTSGPLQVAFLVHS-DFMYYESGVYQHTYGYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGI 284          
The following BLAST results are available for this feature:
BLAST of CB293760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
CATV_NPVOP5.241e-1140.22Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVHC5.241e-1135.64Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATV_NPVCD5.241e-1135.64Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATB3_GIALA5.241e-1143.62Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CATM_MOUSE6.845e-1134.51Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
CATB2_GIALA8.940e-1145.05Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ce11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ce11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293760 ID=CB293760; Name=CB293760; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTACCCACCAACGTGCGAATAAATATTTAACAGACCA
TCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCATTAGAATGAACT
AAGGCCGGGGAGAAACTCATTCACAAGCACAAATATTTTCATCCTCCCTT
CGGCCTTCCACTGCTCTTACGGTGCCAACTATAATTAAACACTGCTACTT
CCACCTTGATTTCCATGAGCCCAGGAAGGTTTAGCAGGGGAGCGTCCTAA
TGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCAC
GAACATTACAGATGGGATAGTCATGTGGGCAGCACCTATAGTGGTCATCA
CAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTT
ACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAAT
AATTGTCACACACACCAGGAGGCTTTGTTGGAGATGGAGGGGACGGTCCA
GGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGC
AATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAA
TATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAG
TAATCAGCTCCATTTTCTGTGCCATATCCAACAGCAGTAACACCATGGTC
CAGAGATGTCCCACATCTTCCCGTAAATATACCCGATTCATATAACTGGA
ATGCCATGCCACCTCCTTCAATGGCAACACTCACGGGTTGATTTGCAACT
GCCTTTTGCAAAGCTTTCTCGTCATTTAGGGGAACATCTTCATAGTCATC
AAT
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