CB293760

Overview
NameCB293760
Unique NameCB293760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:323..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = -1
Query:  533 DYEDVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 847
            D  ++ L  E  L+ AV   +PVSVA E     F+LY+SG++T   CGT+   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASY
Sbjct:  253 DSVNITLGAEDELKDAVGLVRPVSVAFEVI-TGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASY 356          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.860e-16
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = -1
Query:  533 YEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYGTENGAD----YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 844
            + D+P   EKAL KAVA   P+SVAI+ G  +F  Y+ GI F   C +  +DHGV  VGYG E+       YW+VKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  225 FVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKD----RRNHCGIASAASY 330          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.860e-16
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  533 DYEDVPLNDEKALQKAVAN-QPVSVA---IEGGGMAFQLYESGIFTG-RCGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 847
            D  ++ LN E  L+ AV   +PVSVA   I+G    F+ Y+SG++T   CGT+ D   H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          C IA  ASY
Sbjct:  254 DSVNITLNAEDELKNAVGLVRPVSVAFQVIDG----FRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCAIATCASY 357          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.172e-16
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = -1
Query:  533 YEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 844
            + D+P   EKAL KAVA   P+SVA++    + Q Y SGI+    C + +LDHGV  VGYG E    N   YW+VKNSWGS WG  GYI+    +A      CG+A  ASY
Sbjct:  225 FVDIP-QQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIK----IAKDRDNHCGLATAASY 330          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.143e-16
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  536 IDDYEDVPLNDEKALQKAV-ANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 853
            +  Y  V    E  L+  V A +P +VA++     F +Y SGI+  +  + L  +H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  215 VTGYYTVHSGSEVELKNLVGARRPAAVAVDVES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  533 DVPLNDEKALQKAVA-NQPVSVAIEGGGMAFQLYESGIFTGR-CGTSLD---HGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 838
            ++ LNDE A+ +AVA   PVS A E     F +Y+SG+++ + C  + D   H V AVGYG +NG  YWIVKNSWGS WGE GY  +ER         CG+A  ASY
Sbjct:  228 NITLNDEAAMVEAVALYNPVSFAFEVTE-DFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERG-----KNMCGLAACASY 328          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  533 DVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFT-GRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 838
            ++ L  E  L+ AV   +PVS+A E    +F+LY+SG++T   CG++   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  254 NITLGAEDELKHAVGLVRPVSIAFEVIH-SFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASY 354          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  566 IDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 853
            I  Y  VP N+E  L+ A++   V V+I+     FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WG+ GYI M  E N  G  T
Sbjct:  203 ITGYTKVPRNNEAELKAALSQGLVDVSIDASSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVAT 304          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 51/111 (45.95%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  533 YEDVPLNDEKALQKAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTS-LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 844
            + D+P   EKAL KAVA   P+SVA++    + Q Y SGI+    C +  LDHGV  VGYG E    N   YW+VKNSWG  WG  GYI+    +A      CG+A  ASY
Sbjct:  225 FVDIP-QQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIK----IAKDRNNHCGLATAASY 330          
BLAST of CB293760 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  533 DVPLNDEKALQKAVAN-QPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 838
            ++ L  E  L+ AVA  +PVSVA E     F+ Y+SG++    CG +   ++H V AVGYG ENG  YW++KNSWG+ WGE GY +ME          CG+A  ASY
Sbjct:  252 NITLGAEYELKYAVALVRPVSVAFEVV-KGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMG-----KNMCGVATCASY 352          
The following BLAST results are available for this feature:
BLAST of CB293760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
CYSP2_MAIZE1.424e-1644.55Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATL1_HUMAN1.860e-1645.95Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
ALEU_HORVU1.860e-1646.02Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATL1_MOUSE3.172e-1646.85Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATLL_FASHE4.143e-1645.87Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATH_MOUSE7.067e-1647.66Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
ALEU_ARATH7.067e-1643.93Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CPP2_ENTHI9.230e-1644.12Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATL1_RAT9.230e-1645.95Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CYSP3_SOLLC1.574e-1544.86Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ce11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ce11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293760 ID=CB293760; Name=CB293760; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTACCCACCAACGTGCGAATAAATATTTAACAGACCA
TCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCATTAGAATGAACT
AAGGCCGGGGAGAAACTCATTCACAAGCACAAATATTTTCATCCTCCCTT
CGGCCTTCCACTGCTCTTACGGTGCCAACTATAATTAAACACTGCTACTT
CCACCTTGATTTCCATGAGCCCAGGAAGGTTTAGCAGGGGAGCGTCCTAA
TGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCAC
GAACATTACAGATGGGATAGTCATGTGGGCAGCACCTATAGTGGTCATCA
CAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTT
ACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAAT
AATTGTCACACACACCAGGAGGCTTTGTTGGAGATGGAGGGGACGGTCCA
GGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGC
AATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAA
TATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAATTCTTCACAATCCAG
TAATCAGCTCCATTTTCTGTGCCATATCCAACAGCAGTAACACCATGGTC
CAGAGATGTCCCACATCTTCCCGTAAATATACCCGATTCATATAACTGGA
ATGCCATGCCACCTCCTTCAATGGCAACACTCACGGGTTGATTTGCAACT
GCCTTTTGCAAAGCTTTCTCGTCATTTAGGGGAACATCTTCATAGTCATC
AAT
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