CB293765

Overview
NameCB293765
Unique NameCB293765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATM_PONAB (Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.846e-45
Identity = 90/178 (50.56%), Postives = 121/178 (67.98%), Query Frame = 2
Query:  170 PEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLSGLSVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            P DPILGVT A+ +DT   K+NLGVGAYR + GKP VL  VRKA+  +   ++  KEYLPI GL +F K SA+L LG +S  +K     TVQ +SGTG+LR GA FL R +     +++P+P+WGNH  +F  +G+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNP
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNP 216          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATM_MACFA (Aspartate aminotransferase, mitochondrial OS=Macaca fascicularis GN=GOT2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.846e-45
Identity = 90/178 (50.56%), Postives = 121/178 (67.98%), Query Frame = 2
Query:  170 PEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-QLTIYIPQPTWGNHPKVFTLSGLSVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            P DPILGVT A+ +DT   K+NLGVGAYR + GKP VL  VRKA+  +   ++  KEYLPI GL +F K SA+L LG +S  +K     TVQ +SGTG+LR GA FL R +     +++P+P+WGNH  +F  +G+ ++ YRYYDP T G +F G +ED+   P  +++LLHACAHNP
Sbjct:   40 PPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAA-KNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNP 216          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_MOUSE (Aspartate aminotransferase, cytoplasmic OS=Mus musculus GN=Got1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.846e-45
Identity = 94/196 (47.96%), Postives = 126/196 (64.29%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   SVF ++ +AP   +  +T  +  D  P K+NLGVGAYRT+E +P VL VVRK +Q + ND S   EYLPI+GL +F   +++L+LG +SPAI++N V  VQ L GTG+LR GA+FL R Y+        IY+  PTW NH  VF+ +G   ++ Y Y+D   RGL+ QG L DL  AP  +I +LHACAHNP
Sbjct:    1 MAPPSVFAQVPQAPPVLVFKLTADFRDDPDPRKVNLGVGAYRTDESQPWVLPVVRKVEQKIANDNSLNHEYLPILGLAEFRSCASRLVLGDNSPAIRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFKDIRPYCYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_PANTR (Aspartate aminotransferase, cytoplasmic OS=Pan troglodytes GN=GOT1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 93/196 (47.45%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K +Q + ND S   EYLPI+GL +F   +++L LG DSPA+K+  V  VQ L GTG+LR GA+FLAR Y+        +Y+  PTW NH  VF+ +G   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNP
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_HUMAN (Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 93/196 (47.45%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K +Q + ND S   EYLPI+GL +F   +++L LG DSPA+K+  V  VQ L GTG+LR GA+FLAR Y+        +Y+  PTW NH  VF+ +G   +++YRY+D   RGL+ QG L DL  AP  +IV+LHACAHNP
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_MACFA (Aspartate aminotransferase, cytoplasmic OS=Macaca fascicularis GN=GOT1 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 92/196 (46.94%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   SVF ++ +A    +  +T  + +D  P K+NLGVGAYRT++  P VL VV+K +Q + ND S   EYLPI+GL +F   +++L LG DSPA+K+  V  VQ L GTG+LR GA+FLAR Y+        +Y+  PTW NH  VF+ +G   +++YRY+D   RGL+ QG L DL  AP  +I++LHACAHNP
Sbjct:    1 MAPPSVFSEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIIVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_PIG (Aspartate aminotransferase, cytoplasmic OS=Sus scrofa GN=GOT1 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.795e-44
Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   SVF ++ +A    +  +   + +D  P K+NLGVGAYRT++ +P VL VVRK +Q + ND S   EYLPI+GL +F   +++L LG DSPA+++  V  VQ L GTG+LR GAEFLAR Y+        +Y+  PTW NH  VFT +G   +++YRY+D   RGL+ QG L DL  AP  +I +LHACAHNP
Sbjct:    1 MAPPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_BOVIN (Aspartate aminotransferase, cytoplasmic OS=Bos taurus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.795e-44
Identity = 92/196 (46.94%), Postives = 126/196 (64.29%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK +Q + ND S   EYLPI+GL +F   +++L LG DSPA+++  V  VQ L GTG+LR GAEFLAR Y+        +Y+  PTW NH  VF  +G   +++Y Y+D A RGL+ QG L DL  AP  +I +LHACAHNP
Sbjct:    1 MAPPSIFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQRIANDSSINHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQCLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFIAAGFKDIRSYHYWDAAKRGLDLQGFLNDLEKAPEFSIFVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_RAT (Aspartate aminotransferase, cytoplasmic OS=Rattus norvegicus GN=Got1 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44
Identity = 90/196 (45.92%), Postives = 126/196 (64.29%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M   S F ++ +AP   +  +   +  D  P K+NLGVGAYRT++ +P VL VVRK +Q + ND S   EYLPI+GL +F   +++L+LG +SPA+++N V  VQ L GTG+LR GA+FL R Y+        +Y+  PTW NH  VF+ +G   +++YRY+D   RGL+ QG L DL  AP  +I +LHACAHNP
Sbjct:    1 MAPPSFFAQVPQAPPVLVFKLIADFRDDPDPRKVNLGVGAYRTDDSQPWVLPVVRKVEQKIANDHSLNHEYLPILGLAEFRSCASQLVLGDNSPALRENRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPVYVSSPTWENHNGVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNP 196          
BLAST of CB293765 vs. ExPASy Swiss-Prot
Match: AATC_HORSE (Aspartate aminotransferase, cytoplasmic OS=Equus caballus GN=GOT1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 90/196 (45.92%), Postives = 127/196 (64.80%), Query Frame = 2
Query:  131 MDSESVFGKIVRAPEDPILGVTVAYNKDTIPVKLNLGVGAYRTEEGKPLVLNVVRKADQLLLNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNTVTTVQRLSGTGSLRAGAEFLARHYH-----QLTIYIPQPTWGNHPKVFTLSGL-SVKTYRYYDPATRGLNFQGLLEDLMAAPSGAIVLLHACAHNP 700
            M S S+F ++ +A    +  +T  + +D  P K+NLGVGAYRT++ +P VL VVRK +Q + N+ S   EYLPI+GL +F   +++L LG DSPA+++  V  VQ L GTG+LR GAEFL+R Y+        +Y+  PTW NH  VF+ +G   +++Y Y+D   RGL+ QG L DL  AP  +I +LHACAHNP
Sbjct:    1 MTSPSIFVEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQKIANNSSLNHEYLPILGLAEFRSCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLSRWYNGTNNKNTPVYVSSPTWENHNGVFSGAGFKDIRSYHYWDATKRGLDLQGFLNDLENAPEFSIFVLHACAHNP 196          
The following BLAST results are available for this feature:
BLAST of CB293765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AATM_PONAB6.846e-4550.56Aspartate aminotransferase, mitochondrial OS=Pongo... [more]
AATM_MACFA6.846e-4550.56Aspartate aminotransferase, mitochondrial OS=Macac... [more]
AATC_MOUSE6.846e-4547.96Aspartate aminotransferase, cytoplasmic OS=Mus mus... [more]
AATC_PANTR1.525e-4447.45Aspartate aminotransferase, cytoplasmic OS=Pan tro... [more]
AATC_HUMAN1.525e-4447.45Aspartate aminotransferase, cytoplasmic OS=Homo sa... [more]
AATC_MACFA1.992e-4446.94Aspartate aminotransferase, cytoplasmic OS=Macaca ... [more]
AATC_PIG5.795e-4447.45Aspartate aminotransferase, cytoplasmic OS=Sus scr... [more]
AATC_BOVIN5.795e-4446.94Aspartate aminotransferase, cytoplasmic OS=Bos tau... [more]
AATC_RAT7.569e-4445.92Aspartate aminotransferase, cytoplasmic OS=Rattus ... [more]
AATC_HORSE8.368e-4345.92Aspartate aminotransferase, cytoplasmic OS=Equus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06cf02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cf02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293765 ID=CB293765; Name=CB293765; organism=Citrus sinensis; type=EST; length=702bp
GCCCTATGTACAGTTAAACTAACCAAACCACTCCGAGGCCACTACTATAT
TAAACCCAAACATAATTTTCTCTTCACATTTTTTTCCCCCACAAACTCTC
TCATTTCATTGATTTCTTGAAAGAAATTTAATGGATTCTGAATCAGTGTT
TGGAAAGATTGTTCGTGCTCCTGAAGATCCCATTCTAGGGGTCACTGTTG
CTTATAACAAGGATACAATCCCAGTCAAGTTGAACTTGGGTGTTGGTGCT
TACCGAACTGAGGAAGGGAAACCTCTGGTTCTGAATGTAGTGAGAAAGGC
AGATCAGCTCTTACTGAATGACCAGTCACGGGTCAAAGAGTATCTTCCCA
TTGTTGGACTTGTGGATTTTAATAAATTGAGTGCAAAGCTCATCCTTGGT
GCTGACAGCCCTGCGATTAAAGACAACACAGTGACCACCGTTCAGCGCTT
GTCTGGCACTGGTTCTTTGAGGGCTGGAGCTGAGTTTCTGGCAAGGCATT
ATCACCAACTTACCATATATATTCCACAGCCAACATGGGGAAACCATCCC
AAAGTTTTCACTTTATCAGGATTGTCTGTGAAGACCTACCGCTATTATGA
TCCAGCAACACGTGGGCTAAACTTCCAAGGCTTGCTGGAGGATCTTATGG
CTGCACCATCCGGAGCTATAGTTCTTCTTCATGCATGTGCTCATAATCCA
AC
back to top