CB293768

Overview
NameCB293768
Unique NameCB293768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1381 contig Csv1_Contig1381:91..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.747e-12
Identity = 34/99 (34.34%), Postives = 48/99 (48.48%), Query Frame = 2
Query:  143 IQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG 439
            + C+ C    A + C AD A LC  CD  VH+AN L+ KH R  +         CD C ++   + C  D  + C++CD  +H   S SA H+R    G
Sbjct:   10 VACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQI---------CDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEG 99          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 40/132 (30.30%), Postives = 57/132 (43.18%), Query Frame = 2
Query:  128 SEKMNIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI-----RVALSSSCSKDAERNISEPPNQ 508
            S    + CD C    A + C AD A LC  CD +VH AN L+ KH R  +         CD C  +   + C  D  + C++CD  +H   S+S  H R    G       + L++    D E+   +  NQ
Sbjct:    2 SSSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQI---------CDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWGLDLEQGRKDEENQ 124          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 33/98 (33.67%), Postives = 49/98 (50.00%), Query Frame = 2
Query:  131 EKMNIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 424
            E M   C+ C+   A V C AD A LC  CD +VH+AN L+ +H R +L         CD C+ +   + C + +   C  C++  H  G  S+ H+R
Sbjct:    8 ENMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVL---------CDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGG--SSEHRR 94          
The following BLAST results are available for this feature:
BLAST of CB293768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COL14_ARATH6.747e-1234.34Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL15_ARATH1.151e-1130.30Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COLX_ARATH4.373e-1133.67Putative zinc finger protein At1g68190 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293768 ID=CB293768; Name=CB293768; organism=Citrus sinensis; type=EST; length=760bp
GCACTATGATTTTCTTTAAAGGGCTATTGGGATTTTCTCTTCAAAAGAAG
TTTCAAGGATGAAAATTTAATCTTGAGTTTGAATAGATTGGTTATTTTTC
CTTTTATATGTGTAAATATATATAAAGAGTGAAAAGATGAATATACAGTG
TGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGCTGTGCAGATGAGG
CTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCACGCAGCAAACAAGCTA
GCTAGCAAGCACCAGAGGCTTCTTCTTCAGTGTCTTTCCAATAAGCTTCC
TCCATGTGATATATGCCAAGAAAAGGCAGCTTTCATTTTCTGTGTGGAAG
ACAGAGCACTCTTCTGTAAGGACTGTGATGAACCTATCCATTCACCTGGT
AGTCTTTCTGCTAACCATCAGAGGTTTTTGGCCACCGGAATCCGAGTAGC
CTTAAGCTCTAGTTGTTCCAAAGATGCTGAAAGGAATATATCTGAGCCAC
CAAATCAGCAAGCATCACAAACTTCAGTAAAAATGCCTACACAGCAATCT
TCGGGCATCTCATCTCCTTGGGCCGTGGACGACTTCTTACAATTCTCAGA
TTTTGAATCCTCCGGAAAGAAAGAGCAACTCGAGTTTGGAGAGCTTGAAT
GGATAGCAGACATGGGAATATTCAACGACCAACTTCCTCAGGAGGCTCTA
GCAGCTGCTGAAGTACCTCAACTCCCGGTGTCCCAGTCCAACAACTTAAT
ATCATCATAC
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