CB293806

Overview
NameCB293806
Unique NameCB293806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 63/238 (26.47%), Postives = 108/238 (45.38%), Query Frame = -2
Query:  156 IWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----DPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVI-IWPVAREGD-----QWEGKVLHDF---KTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQ 791
            +W+E  G SN+       WIK     D ++SV  + +AP  +GL +   S+DG + ++   A    + S+    H +      + +SW PS+     P   VGS   D      SG     V++++      K      L    D V D+A+APNLG     +A A++D ++  + P+ +E       + E ++   F    + V+RVSW++T  +LA +  +  V LW+      W+
Sbjct:   85 VWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS---DDSNTAYSG----KVQIYEYVENTRKYAKVETLMTVTDPVHDIAFAPNLGRSFHVLAIATKDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNWK 313          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 55/203 (27.09%), Postives = 86/203 (42.36%), Query Frame = -2
Query:  159 IKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQW 761
            I +H  + HK  +  + W  H  G   A    D  I +++   +  W T  I    H   +  + W+P                Q L S   D T  +W   +G  + +C   L+ H + V+ V+W+ + GL    +A+ S D  V IW VA + +     VL+     V RV W  T  ILA A  +N + ++ E A+D  W
Sbjct:    5 ILEHTLQGHKGRIWGVAW--HPKGNTFASCGEDKAIRIWSLSGNS-WSTKTILSDGHKRTIREIRWSPCG--------------QYLASASFDATTAIWSKSSG--EFECNATLEGHENEVKSVSWSKSGGL----LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKEILASASYDNTIKMFAESALDSDW 184          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_DROME (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila melanogaster GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 55/203 (27.09%), Postives = 87/203 (42.86%), Query Frame = -2
Query:  159 IKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQW 761
            I +H  + HK  +  + W  H  G   A    D  I +++   +  W T  I    H   +  + W+P                Q L S   D T  +W   +G  + +C   L+ H + V+ V+W+ + GL    +A+ S D  V IW VA + +     VL+     V RV W  T +ILA A  +N + ++ EE +D  W
Sbjct:    5 ILEHTLQGHKGRIWGVAW--HPKGNVFASCGEDKAIRIWSLTGNT-WSTKTILSDGHKRTIREIRWSPCG--------------QYLASASFDATTAIWSKSSG--EFECNATLEGHENEVKSVSWSRSGGL----LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAEEPIDNDW 184          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_AEDAE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 55/211 (26.07%), Postives = 96/211 (45.50%), Query Frame = -2
Query:  165 IWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEG-KVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDG 791
            IW E  S  W+   V  D H  ++  + W+P   G  +A  S D  ++++  ++ G ++ +   + H   V SVSW+ S   G+L+ +         CS  RD +V VW++     + +C   L  H   V+ V W P+  +    +ASAS D  + ++        W     L   ++ V+ +S+  +GN LA    +  V +W+E   G
Sbjct:   40 IWAEDASQRWVAKTVLSDGHSRTIRDVAWSP--CGQYLASASFDATVAIWDKKS-GEFECNATLEGHENEVKSVSWSKS---GSLLAT---------CS--RDKSVWVWEVAQED-EYECAAVLNTHTQDVKKVEWHPHEDI----LASASYDNTIKLYKEDLADSDWSSFDTLVSHESTVWSISFDGSGNRLASCSDDQTVKIWQEYKPG 228          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_IXOSC (Probable cytosolic iron-sulfur protein assembly protein OS=Ixodes scapularis GN=ISCW023049 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.797e-11
Identity = 52/198 (26.26%), Postives = 84/198 (42.42%), Query Frame = -2
Query:  156 EDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWE-GKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQWQ 743
            E H++ V +  W+P   G  +A  S D  + ++    D  ++ + +   H   V  V W P  D              +L S   DNT++ +      W+  C+  L  H   V  +++ P    P+  +AS + DG V +W    +   WE    L     PVY VSW  T   LA A G+N V ++ ++  D  W+
Sbjct:   99 EGHENEVKACGWSPS--GRFLATCSRDKTVWIWEVGEDEEFECASVQTCHSQDVKKVLWHPDRD--------------ELASASYDNTIRFFCEEVDDWQ--CYCTLDKHASTVWGLSFGPG---PEPQLASCAADGSVYVWGTKGDRRSWELCGTLERHPRPVYDVSWCRTRGFLATACGDNAVRVFVKDGGDCSWR 275          

HSP 2 Score: 20.7866 bits (42), Expect = 2.797e-11
Identity = 6/8 (75.00%), Postives = 7/8 (87.50%), Query Frame = -1
Query:  130 GDCSWAVG 153
            GDCSW +G
Sbjct:  270 GDCSWRLG 277          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_DROSI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila simulans GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 54/203 (26.60%), Postives = 87/203 (42.86%), Query Frame = -2
Query:  159 IKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQW 761
            I +H  + HK  +  + W  H  G   A    D  I +++   +  W T  I    H   +  + W+P                Q L S   D T  +W   +G  + +C   L+ H + V+ V+W+ + GL    +A+ S D  V IW VA + +     VL+     V RV W  T ++LA A  +N + ++ EE +D  W
Sbjct:    5 ILEHTLQGHKGRIWGVAW--HPKGNVFASCGEDKAIRIWSLTGNT-WSTKTILSDGHKRTIREIRWSPCG--------------QYLASASFDATTAIWSKSSG--EFECNATLEGHENEVKSVSWSRSGGL----LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAEEPIDNDW 184          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_DROSE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila sechellia GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 51/202 (25.25%), Postives = 86/202 (42.57%), Query Frame = -2
Query:  159 IKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQW 761
            I +H  + HK  +  + W  H  G   A    D  I +++   +     + +   H   +  + W+P                Q L S   D T  +W   +G  + +C   L+ H + V+ V+W+ + GL    +A+ S D  V IW VA + +     VL+     V RV W  T ++LA A  +N + ++ EE +D  W
Sbjct:    5 ILEHTLQGHKGRIWGVAW--HPKGNVFASCGEDKAIRIWSLTGNTWGTKTILSDGHKRTIREIRWSPCG--------------QYLASASFDATTAIWSKSSG--EFECNATLEGHENEVKSVSWSRSGGL----LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAEEPIDNDW 184          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_DROAN (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila ananassae GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 51/203 (25.12%), Postives = 86/203 (42.36%), Query Frame = -2
Query:  150 DHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQWQQV 755
            +H  + HK  +  + W  H  G   A    D  I +++   +     + +   H   +  + W+P                Q L S   D T  +W   +G  + +C   L+ H + V+ V+W+ + GL    +A+ S D  V IW VA + +     VL+     V RV W  T  +LA A  +N + ++ E+A+D  W  V
Sbjct:    7 EHTLQGHKGRIWGVAW--HPKGNVFASCGEDKAIRIWSLNGNTWTTKTILSDGHKRTIREIRWSPCG--------------QYLASASFDGTTAIWSKSSG--EFECNATLEGHENEVKSVSWSRSGGL----LATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKELLASASYDNTIKMFAEDALDSDWDCV 187          
BLAST of CB293806 vs. ExPASy Swiss-Prot
Match: CIAO1_DROER (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila erecta GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 54/203 (26.60%), Postives = 85/203 (41.87%), Query Frame = -2
Query:  159 IKDHVFEDHKSSVNSIDWAPHELGLCMACGSSDGNISVFTARADGGWDTSRI-DQAHPVGVTSVSWAPSTDPGALVGSGFLDPVQKLCSGGRDNTVKVWKLYNGIWKMDCFPALQMHIDWVRDVAWAPNLGLPKFTIASASEDGKVIIWPVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLW-EEAVDGQW 761
            I +H  + HK  +  + W  H  G   A    D  I +++      W T  I    H   +  + W+P                Q L S   D T  +W   +G  + +C   L+ H + V+ V+W+ + GL    +A+ S D  V IW VA + +     VL+     V RV W  T  +LA A  +N + ++ E+ VD  W
Sbjct:    5 ILEHTLQGHKGRIWGVAW--HPKGNVFASCGEDKAIRIWSLTGST-WSTKTILSDGHKRTIREIRWSPCG--------------QYLASASFDATTAIWSKSSG--EFECNATLEGHENEVKSVSWSRSGGL----LATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEVLASASYDNTIKMYAEDPVDNDW 184          
The following BLAST results are available for this feature:
BLAST of CB293806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SEH1_OSMMO2.737e-1126.47Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
CIAO1_DROWI2.737e-1127.09Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROME2.737e-1127.09Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_AEDAE2.737e-1126.07Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_IXOSC2.797e-1126.26Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROSI3.574e-1126.60Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROSE4.668e-1125.25Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROAN4.668e-1125.12Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROER6.097e-1126.60Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ch10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ch10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293806 ID=CB293806; Name=CB293806; organism=Citrus sinensis; type=EST; length=795bp
GATGCTCAGCTATGCAGGACCTTAAAAAGAGTGGTGGATTGCGTGTTTAG
GGTCCTCAAAAGAAATTATAAAGAGGTTCTAAAATGCAATCTTGTATTTC
GTGATAAAAAATTGAAAAACTTAAAAAAGTCCTACGGCCCAACTGCAATC
ACCTGTTGCCACTGCCCATCCACTGCTTCTTCCCACAGTGTTACATTGTT
GTTTCCATCAGCCACAGCCAATATGTTTCCAGTCAGAGACCAGCTGACTC
TATAAACAGGGGTCTTGAAGTCATGCAACACCTTACCTTCCCATTGATCT
CCTTCCCTGGCCACAGGCCATATAATAACTTTCCCATCCTCCGATGCACT
TGCAATAGTAAATTTTGGAAGCCCCAAGTTGGGAGCCCAAGCAACATCTC
TAACCCAATCAATATGCATTTGAAGAGCTGGAAAGCAGTCCATCTTCCAA
ATTCCATTGTACAGCTTCCACACCTTCACGGTATTATCACGACCACCTGA
ACAAAGCTTCTGAACTGGGTCAAGAAAACCAGAACCCACAAGTGCACCGG
GATCTGTTGATGGGGCCCATGAAACTGAAGTCACACCAACCGGATGAGCT
TGGTCAATCCGAGATGTATCCCAGCCGCCATCAGCTCTAGCCGTAAAAAC
TGATATGTTCCCATCTGACGAACCACAAGCCATACATAGACCGAGCTCAT
GAGGCGCCCAATCAATCGAATTGACTGACGATTTGTGGTCCTCAAAAACA
TGATCTTTGATCCACTCATTACTGTTACCCTCCTTCCATATTATG
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