CB293828

Overview
NameCB293828
Unique NameCB293828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.172e-116
Identity = 208/236 (88.14%), Postives = 221/236 (93.64%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            AR GVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTE+ HTLPHSATRAAMLVR+NTLLQGYSGIRFEILE IT+ LN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA G  G+VL+  EAF  AG+ SGFFELQPKEGLALVNGTAVGSGLA+ VLFE N+LA++SE+LSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   85 ARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITRLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPTGEVLDAAEAFKAAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSELLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 320          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.531e-116
Identity = 210/236 (88.98%), Postives = 222/236 (94.07%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            AR GVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTK+GGALQKELIRFLN+GIFGNGTES HTLP SATRAAMLVR+NTLLQGYSGIRFEILE I+KFLN+NITPCLPLRGTITASGDLVPLSYIAGLLTGR NSKAVG  G++L+P EAF LAGV  GFFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   84 AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTESCHTLPQSATRAAMLVRINTLLQGYSGIRFEILEAISKFLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAVGPTGEILHPKEAFRLAGVEGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 319          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 4.454e-116
Identity = 209/236 (88.56%), Postives = 223/236 (94.49%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTES+HTLPH+ATRAAMLVR+NTLLQGYSGIRFEILE ITK LN+NITPCLPLRGTITASGDLVPLSYIAGLLTGR NSKA G +G++LN  EAF LAG+ + FFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   95 ARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRSNSKAHGPSGEMLNAKEAFQLAGINAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 330          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 4.454e-116
Identity = 210/237 (88.61%), Postives = 223/237 (94.09%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTES-SHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFG+G E+ ++TLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G  L+P EAF LAGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFEANILA+++EV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   87 ARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAEAGNNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGVTLSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 323          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_PETCR (Phenylalanine ammonia-lyase 2 OS=Petroselinum crispum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.296e-115
Identity = 210/236 (88.98%), Postives = 221/236 (93.64%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNG  S +TLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G +L+P EAF LAGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFEANILA+++EV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   88 ARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 321          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_PETCR (Phenylalanine ammonia-lyase 1 OS=Petroselinum crispum GN=PAL1 PE=1 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.296e-115
Identity = 210/236 (88.98%), Postives = 221/236 (93.64%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNG  S +TLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G +L+P EAF LAGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFEANILA+++EV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   88 ARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 321          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_STYHU (Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.211e-115
Identity = 208/236 (88.14%), Postives = 220/236 (93.22%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            +RAGVKASSDWVMDSM  GTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTE++ TLPH+ATRAAMLVR+NTLLQGYSGIRFEILE ITK LN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ LN  EAF  AG+ S FFELQPKEGLALVNGT VGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   85 SRAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAKEAFQAAGIGSDFFELQPKEGLALVNGTPVGSGLASVVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 320          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.211e-115
Identity = 208/236 (88.14%), Postives = 221/236 (93.64%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            AR GVKASS+WVM+SM  GTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTESSHTLPH+ATRAAMLVR+NTLLQGYSGIRFEILE ITK LN+N+TPCL LRGTITASGDLVPLSYIAGLLTGRPNSKAVG +G+VLN  EAF LA + S FFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   83 AREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLDLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 318          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 2.887e-115
Identity = 204/236 (86.44%), Postives = 219/236 (92.80%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTKQG ALQKELIRFLN+G+FG+  ES HTLPH ATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN+N+TPCLPLRGTITASGDLVPLSYIAG+LTGRPNSKAVG +GQ L+  EAF   G+ SGFFELQPKEGLALVNGTAVGSGLA+TVLF+ NILA++SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   87 ARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGSTKESGHTLPHQATRAAMLVRINTLLQGYSGIRFEILEVITKFLNNNVTPCLPLRGTITASGDLVPLSYIAGMLTGRPNSKAVGPDGQTLSAAEAFEFVGINSGFFELQPKEGLALVNGTAVGSGLASTVLFDTNILALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 322          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.433e-114
Identity = 205/236 (86.86%), Postives = 218/236 (92.37%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVT GFGATSHRRTK GGALQKELIRFLN+G+FGNG ES HTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK +N NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ LN  EAF +AG++ GFFELQPKEGLALVNGTAVGS +A+ VLFE+NI A+MSEVLSAIF EVMNGKPEFTD+LTHKLKHHPGQIEAAAIM
Sbjct:   74 ARAGVKASSDWVMDSMSKGTDSYGVTAGFGATSHRRTKNGGALQKELIRFLNAGVFGNGIESFHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEKLNAEEAFCVAGISGGFFELQPKEGLALVNGTAVGSAMASIVLFESNIFAVMSEVLSAIFTEVMNGKPEFTDYLTHKLKHHPGQIEAAAIM 309          
The following BLAST results are available for this feature:
BLAST of CB293828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PALY_POPTR1.172e-11688.14Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PALY_CAMSI1.531e-11688.98Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PALY_TRISU4.454e-11688.56Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PAL3_PETCR4.454e-11688.61Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL2_PETCR1.296e-11588.98Phenylalanine ammonia-lyase 2 OS=Petroselinum cris... [more]
PAL1_PETCR1.296e-11588.98Phenylalanine ammonia-lyase 1 OS=Petroselinum cris... [more]
PALY_STYHU2.211e-11588.14Phenylalanine ammonia-lyase OS=Stylosanthes humili... [more]
PAL1_SOYBN2.211e-11588.14Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PAL1_PRUAV2.887e-11586.44Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL1_SOLLC1.433e-11486.86Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06da12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06da12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293828 ID=CB293828; Name=CB293828; organism=Citrus sinensis; type=EST; length=708bp
GCCCGCGCCGGCGTCAAGGCCAGCAGCGATTGGGTGATGGACAGCATGAT
GAAAGGGACTGATAGCTATGGTGTCACCACTGGCTTTGGTGCAACTTCTC
ACCGGCGAACCAAGCAAGGTGGTGCTTTGCAAAAGGAGCTCATTAGATTC
TTGAATTCTGGAATTTTTGGCAATGGCACTGAATCAAGCCACACATTGCC
TCACTCGGCAACAAGGGCAGCAATGCTGGTGAGAGTCAACACCTTGTTAC
AAGGATACTCAGGCATCAGGTTTGAGATCCTGGAAACCATTACCAAGTTC
CTTAACCATAACATCACCCCTTGCTTGCCGCTACGTGGCACGATCACCGC
GTCGGGCGACCTGGTCCCACTCTCGTACATTGCTGGGCTTTTGACAGGCA
GGCCCAACTCGAAGGCTGTTGGGTCCAACGGCCAAGTTCTCAACCCCACC
GAGGCCTTCAACCTAGCTGGGGTCACTAGTGGATTTTTTGAATTGCAGCC
TAAGGAAGGTCTTGCCCTGGTGAATGGCACAGCGGTTGGCTCTGGTTTAG
CTGCCACGGTACTCTTTGAGGCTAACATATTAGCCATTATGTCTGAAGTT
TTATCTGCAATTTTTGCGGAAGTGATGAATGGGAAACCTGAATTTACAGA
CCACTTGACACATAAGTTGAAGCACCATCCGGGACAAATTGAAGCTGCAG
CTATTATG
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