CB293828

Overview
NameCB293828
Unique NameCB293828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 1.871e-114
Identity = 207/236 (87.71%), Postives = 222/236 (94.07%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTESSHTLPH+ATRAAMLVR+NTLLQGYSGIRFEILE ITK +N+N+TPCL LRGTITASGDLVPLSYIAGLLTGRPNSKA G++G++LN  EAF  A +  GFFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   94 ARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCL-LRGTITASGDLVPLSYIAGLLTGRPNSKAHGTSGEILNAKEAFQSAEINDGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 328          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 411.764 bits (1057), Expect = 1.871e-114
Identity = 206/236 (87.29%), Postives = 219/236 (92.80%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLN+GIFG+G +SS+ LPHSATRAAMLVR+NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG  G+ L   EAF LAGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFE NILA+++EV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   78 ARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGNDSSNILPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGENLTAAEAFKLAGVDGGFFELQPKEGLALVNGTAVGSGMASMVLFETNILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 313          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.169e-114
Identity = 207/236 (87.71%), Postives = 221/236 (93.64%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARA VKA SDWVM+SM KGTDSYG+TTGFGATSHRRTKQGGALQKELIRFLN+GIFGNGTES+ TLPH+ATRAAMLVRVNTLLQGYSGIRFEILE ITK LN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG +G++LN  EAF LA + S FFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   82 ARACVKAISDWVMESMDKGTDSYGITTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 317          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_CICAR (Phenylalanine ammonia-lyase 2 OS=Cicer arietinum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 4.169e-114
Identity = 200/235 (85.11%), Postives = 217/235 (92.34%), Query Frame = 1
Query:    4 RAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            R  VKASSDWV+DSM KGTDSYGVTTGFGATSHRRTKQGGALQ ELIRFLN+GIFGNGTES+ TLPH+ATRAAMLVR+NTLLQGYSGIRFEI+E I KFLNHNITPCLPLRGTITASGDLVPLSY+AGLL GRPNSK++G NGQ+LN  EAF LAG+ +GFFELQPKEGLALVNGTAVGSGLA+  LFE N+L ++SE+LSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   89 RYAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESTQTLPHTATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQILNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLALFETNLLVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 323          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_SOLTU (Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum GN=PAL-1 PE=3 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 2.702e-113
Identity = 202/236 (85.59%), Postives = 220/236 (93.22%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGF ATSHRRTK GGALQKELI+FLN+G+FGNGTES+HTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK +N NITPCLPLRGT+TASGDLVPLSYIAGLLTGRPNSKAVG +G  L+  EAF +A V+ GFFELQPKEGLALVNGTAVGSG+A+ VL+++NILA+M EVLSAIFAEVMNGKPEFTD+LTHKLKHHPGQIEAAAIM
Sbjct:   90 ARAGVKASSDWVMDSMSKGTDSYGVTTGFCATSHRRTKNGGALQKELIKFLNAGVFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGSKLDADEAFRVAAVSGGFFELQPKEGLALVNGTAVGSGMASIVLYDSNILAVMFEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIM 325          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 3.529e-113
Identity = 203/236 (86.02%), Postives = 217/236 (91.95%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTK GG LQK LIRFLN+G+FG GTES+HTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK +N NI+PCLPLRGT+TASGDLVPLSYIAGLLTGRPNSKAVG  G  L+  EAF +AGVT GFFELQPKEGLALVNGTAVGS +A+ VLFE+NILA+M EVLSAIFAEVMNGKPEFTD+LTHKLKHHPGQIEAAAIM
Sbjct:   93 ARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKNGGTLQKNLIRFLNAGVFGIGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNISPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPTGSKLDAEEAFRVAGVTGGFFELQPKEGLALVNGTAVGSAMASIVLFESNILAVMFEVLSAIFAEVMNGKPEFTDYLTHKLKHHPGQIEAAAIM 328          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 7.863e-113
Identity = 205/236 (86.86%), Postives = 219/236 (92.80%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            AR GVKASS+WVM+SM KGTDSYGVTTGFGATSH RTKQGGALQKELIRFLN+GIFGNGTES+HTLP +ATRAAMLVR+NTLLQGYSGI FEILE ITK LN  +TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA G +G+VLN  EAFNLAG+ + FFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   95 ARDGVKASSEWVMESMNKGTDSYGVTTGFGATSHSRTKQGGALQKELIRFLNAGIFGNGTESNHTLPKTATRAAMLVRINTLLQGYSGIDFEILEAITKPLNKTVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEVLNAKEAFNLAGINAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 330          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.752e-112
Identity = 204/236 (86.44%), Postives = 220/236 (93.22%), Query Frame = 1
Query:    1 ARAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ARAGVKASSDWVM+SM KGTDSYGVTT  GATSHRRTKQGGALQKELIRFLN+GIFGNG+ES+HTLPH+ATRAAMLVR+NTLLQGYSGIRFEILE ITK +N+N+TPCL LRGTITASGDLVPLSYIAGLLTGRPNSKA G +G++LN  EAF  AG+  GFFELQPKEGLALVNGTAVGSGLA+ VLFEANILA++SEVLSAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   95 ARAGVKASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNGSESTHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCL-LRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAREAFQSAGINDGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 329          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 2.988e-112
Identity = 201/231 (87.01%), Postives = 214/231 (92.64%), Query Frame = 1
Query:   16 KASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            ++SSDWVM+SM  GTDSYGVTTGFGATSHRRTK G ALQ+ELIRFLN+GIFG GT +SHTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK LNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVG NG+ L   EAF LAGV  GFFELQPKEGLALVNGTAVGSG+A+ VLFEAN+LA++SEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   83 ESSSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGHALQQELIRFLNAGIFGTGTGASHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEALTAEEAFKLAGVQGGFFELQPKEGLALVNGTAVGSGMASMVLFEANVLAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 313          
BLAST of CB293828 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.135e-111
Identity = 199/235 (84.68%), Postives = 215/235 (91.49%), Query Frame = 1
Query:    4 RAGVKASSDWVMDSMMKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNSGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGSNGQVLNPTEAFNLAGVTSGFFELQPKEGLALVNGTAVGSGLAATVLFEANILAIMSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIM 708
            RAGVKASSDWVMDSM KGTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLN+GIFG+  +S+H LPH+ATRAAMLVR NTLLQGYSGIRFEILE ITKFLN NITPCLPLRGTITASGDLVPLSYIAGLL GRPNSK+VG  G+ L+P E F LAG+  GFFELQPKEGLALVNGTAVGSG+A+ VLF+AN LA++SEV+SAIFAEVM GKPEFTDHLTHKLKHHPGQIEAAAIM
Sbjct:   81 RAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQRELIRFLNAGIFGSSLDSTHKLPHTATRAAMLVRFNTLLQGYSGIRFEILEAITKFLNGNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKSVGPKGETLSPAEGFKLAGIDGGFFELQPKEGLALVNGTAVGSGMASMVLFDANTLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 315          
The following BLAST results are available for this feature:
BLAST of CB293828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PAL1_PEA1.871e-11487.71Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL1_DAUCA1.871e-11487.29Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL2_PHAVU4.169e-11487.71Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PAL2_CICAR4.169e-11485.11Phenylalanine ammonia-lyase 2 OS=Cicer arietinum G... [more]
PAL1_SOLTU2.702e-11385.59Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... [more]
PAL2_SOLTU3.529e-11386.02Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]
PALY_MEDSA7.863e-11386.86Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PAL2_PEA1.752e-11286.44Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PAL2_IPOBA2.988e-11287.01Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL1_RUBID1.135e-11184.68Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06da12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06da12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293828 ID=CB293828; Name=CB293828; organism=Citrus sinensis; type=EST; length=708bp
GCCCGCGCCGGCGTCAAGGCCAGCAGCGATTGGGTGATGGACAGCATGAT
GAAAGGGACTGATAGCTATGGTGTCACCACTGGCTTTGGTGCAACTTCTC
ACCGGCGAACCAAGCAAGGTGGTGCTTTGCAAAAGGAGCTCATTAGATTC
TTGAATTCTGGAATTTTTGGCAATGGCACTGAATCAAGCCACACATTGCC
TCACTCGGCAACAAGGGCAGCAATGCTGGTGAGAGTCAACACCTTGTTAC
AAGGATACTCAGGCATCAGGTTTGAGATCCTGGAAACCATTACCAAGTTC
CTTAACCATAACATCACCCCTTGCTTGCCGCTACGTGGCACGATCACCGC
GTCGGGCGACCTGGTCCCACTCTCGTACATTGCTGGGCTTTTGACAGGCA
GGCCCAACTCGAAGGCTGTTGGGTCCAACGGCCAAGTTCTCAACCCCACC
GAGGCCTTCAACCTAGCTGGGGTCACTAGTGGATTTTTTGAATTGCAGCC
TAAGGAAGGTCTTGCCCTGGTGAATGGCACAGCGGTTGGCTCTGGTTTAG
CTGCCACGGTACTCTTTGAGGCTAACATATTAGCCATTATGTCTGAAGTT
TTATCTGCAATTTTTGCGGAAGTGATGAATGGGAAACCTGAATTTACAGA
CCACTTGACACATAAGTTGAAGCACCATCCGGGACAAATTGAAGCTGCAG
CTATTATG
back to top