CB293832

Overview
NameCB293832
Unique NameCB293832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_METST (50S ribosomal protein L10e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = -3
Query:  302 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFPGRQKIIVSRKWGFTKF 787
            +PY +  + R +P  KI  YD+G       EFP  V L   E  ++S  +LEAARIA N+Y+ +  GK  + L++R +P H++R N M + AGADR+Q+GMRGAFGK   + A V   Q +++   +  +   A+ AL RA  K P   K+++ +     +F
Sbjct:    3 RPYTRKDYIRKIPASKIVQYDMGNLS---GEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF 161          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = -3
Query:  350 NKP-YPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFP 790
            +KP Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   13 DKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = -3
Query:  323 KNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFPGRQKIIVSR 793
            + + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EALRR   K P   KI+V++
Sbjct:   13 ERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.200e-22
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = -3
Query:  350 NKP-YPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFP 790
            +KP Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   13 DKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.568e-22
Identity = 58/158 (36.71%), Postives = 94/158 (59.49%), Query Frame = -3
Query:  323 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFPGRQKIIVSR 796
            +K++ + + ++  GVP  ++  +D+G K     +FP  + L++ E+  +   ALEAARI  N+ M   AG+  FH+++RV+P  VLR NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     +   A++ALRRA  K P    I+V +
Sbjct:   12 VKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = -3
Query:  350 NKP-YPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFP 790
            +KP Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A EA+RRA  K P
Sbjct:   13 DKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEGHLKFALEAMRRAAMKLP 157          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = -3
Query:  323 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFPGRQKIIVSR 796
            +  K Y + ++  GVP  KI  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++ALR   +K P   ++++ R
Sbjct:   12 LAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = -3
Query:  326 YPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAK-YAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSPHAQEALRRAKFKFPGRQKIIVS 781
            Y +  +  G+P PKI  + +G       ++ + + L++ EK  +   ALEAAR+   KY++K  A +  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G++++ VR K  +   A+EAL+ A  K P R KI +S
Sbjct:   17 YTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTKIEIS 167          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 61/148 (41.22%), Postives = 81/148 (54.73%), Query Frame = -3
Query:  350 NKP-YPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFP 790
            +KP Y +  + RG P PKI I+D+G       +F F V L   +   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:   13 DKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CB293832 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.780e-22
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = -3
Query:  329 IKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSPHAQEALRRAKFKFPGRQKIIV 796
            +  K Y +  +  GVP  K+  +D+G      ++FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  GT ARVA  Q + +V         A++AL  + +K P   ++IV
Sbjct:   12 LAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164          
The following BLAST results are available for this feature:
BLAST of CB293832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_METST7.037e-2337.0450S ribosomal protein L10e OS=Methanosphaera stadt... [more]
RL10_PYRFU9.190e-2341.8950S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_METM59.190e-2338.8550S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_PYRHO1.200e-2241.8950S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_METBU1.568e-2236.7150S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_THEON2.674e-2241.2250S ribosomal protein L10e OS=Thermococcus onnurin... [more]
RL10_METPE3.492e-2237.3450S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_SULAC5.957e-2240.9150S ribosomal protein L10e OS=Sulfolobus acidocald... [more]
RL10_PYRAB7.780e-2241.2250S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]
RL10_METLZ7.780e-2237.8250S ribosomal protein L10e OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293832 ID=CB293832; Name=CB293832; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTCCTAAAACAACTGCAAGGATCCCTTTTTTAAAC
CAAAGAAACATGTCACTTCAACTTGAGAAATCCAGTTCAACTGAGAAAAG
GTACGAAATGGAAAATAATAAACTAGACAGTAAACCCAGCTCTGCTATTT
TGAGACAGTAAATATCTTAGGTTGTTGCTTCCAGGAAAGCTCTTCCAGGT
TGACGTTGAGCCAAAGGACCATGACATCCGAAAAGCTTGGCATTCACACC
ATCTGGGACAATCCTGTTCTCCGACTTCCACCGCAAATAATCAGCACGGC
TGAACTTGGTAAATCCCCATTTCCTGCTGACAATAATCTTTTGACGACCA
GGAAACTTGAACTTAGCACGGCGAAGGGCCTCCTGAGCATGGGGGCTGTT
ACTATCCTTGCAACGGACAGAAAGCAAGACCTGCCCGATAGCAACACGAG
CACAGGTTCCTTGGGGCTTTCCAAAAGCACCCCTCATTCCAGTCTGGAGC
CTATCAGCCCCAGCACACGAAAGCATCTTGTTAATACGCAAAACATGGAA
GGGGTGCACCCTCACTCGCAAATGGAAAGCATCCTTGCCGGCGTACTTGG
CCATGTACTTGTTGCAAGCGATACGGGCAGCTTCCAAGGCCTCGCTCGAC
ACGTTCTCCTTCTCCCAACTGACGAGGTGAACGCAGAAGGGGAACTCGTC
GACGCCTTTCTTCTTCATCCCGACATCGTAGATTCTGATCTTGGGATCGG
GGACACCGCGGCAAAAGCGGGACTTTGGGTAGGGTTTGTTCTTGATTTGG
C
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