CB293836

Overview
NameCB293836
Unique NameCB293836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: MSSP1_ARATH (Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = -2
Query:    8 PRIFEKAGITSKDEKLLATVAVGFVKTTF-------------ILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 496
            P+I E+AG+    + LL+++ +  +  +F             I+VA  L+D  GRR LLL ++  +I SL  L IS  +    H   +    L+   V+ Y  FF +G GPI  +  SEI P ++R    +I  MV  +   +V+ +   L  +I + G F +YA++  ++W+F Y
Sbjct:  534 PQILERAGV----DILLSSLGLSSISASFLISGLTTLLMLPAIVVAMRLMDVSGRRSLLLWTIPVLIVSLVVLVISELI----HISKVVNAALSTGCVVLYFCFFVMGYGPIPNILCSEIFPTRVRGLCIAICAMVFWIGDIIVTYSLPVLLSSIGLVGVFSIYAAVCVISWIFVY 701          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GLCP_SYNY3 (Glucose transport protein OS=Synechocystis sp. (strain PCC 6803) GN=gtr PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = -2
Query:    8 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAI---SLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 490
            ++   G T +++ LL TV  GF+     LVA   +DK GR+PLLL    GM  +L  L++     TV++        A  +A+ T   YV  F    GPI  V   E+   K+RA   S+   V  + + ++S TF  L   + +G ++ LYA+ A+++  F +
Sbjct:  292 LWRSVGFT-EEKSLLITVITGFINILTTLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALVTANLYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVGLGPAYGLYATSAAISIFFIW 454          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: ITR2_YEAST (Myo-inositol transporter 2 OS=Saccharomyces cerevisiae GN=ITR2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.169e-14
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = -2
Query:    2 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISL----------TVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 490
            IFE  G  +     +      FV   F L+A F +DKIGRR +LL  + GM  +L   AI+             +  S     W + + I  ++ Y AF+++G+G +     SE+ P  +R  G S     N   S V++ TFL++ + IT  G+F  +A +A ++ +F Y C
Sbjct:  386 IFETVGFKNSSAVSIIVSGTNFV---FTLIAFFCIDKIGRRYILLIGLPGMTVALVICAIAFHFLGIKFNGADAVVASDGFSSWGI-VIIVFIIVYAAFYALGIGTVPW-QQSELFPQNVRGVGTSYATATNWAGSLVIASTFLTMLQNITPTGTFSFFAGVACLSTIFCYFC 553          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = -2
Query:    8 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGS--FFLYASIASVAWVFFY 490
            IFEK+G+   ++ + AT+  G V T F +V+ F++++ GRR L L  +AGM      + I+LT++DQ    + W   L+I  +  +VAFF IG GPI     +E+     R    ++  + N  ++ +V M F  +++   + GS  F ++  +  + ++F Y
Sbjct:  296 IFEKSGV---EQPVYATIGSGVVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALTLLDQ----MPWMSYLSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAFAVAGLSNWTSNFIVGMGFQYIAQ---LCGSYVFIIFTVLLVLFFIFTY 448          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = -2
Query:   35 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASI 496
            P+IFE AG T+  E++  TV VG        +A  L+D+ GR+P L      M A +  L   + +   S      A   AI+ +L ++  F++  GP+  V  SEI PLK R  G +     N + + +V  TFL++   +    +F++YA++
Sbjct:  275 PKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPS----AQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVYAAL 424          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = -2
Query:   35 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASI 496
            P+IFE AG T+  E++  TV VG        +A  L+D+ GR+P L      M A +  L   + +   S      A   AI+ +L ++  F++  GP+  V  SEI PLK R  G +     N + + +V  TFL++   +    +F++YA++
Sbjct:  275 PKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPS----AQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVYAAL 424          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR1_LEIDO (Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.152e-13
Identity = 49/163 (30.06%), Postives = 83/163 (50.92%), Query Frame = -2
Query:    8 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVG--LAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 490
            I   AG       ++ ++ + F+   F  VA F +D+ GRR +LL SV G +  L  +AI    I     ++ ++VG  L ++ +  ++A ++ G+G I  V   EI P  LR   AS+  M N   + +VS  F  L  AI +GG+F + + + ++  +F Y
Sbjct:  265 ILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGT---RISYSVGGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTFTIISGLMALGCIFVY 424          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: EDL17_ARATH (Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 48/161 (29.81%), Postives = 83/161 (51.55%), Query Frame = -2
Query:    8 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 490
            IF KAG +      + T  +G       ++   L+DK GRRPLL++S  GM  +   L ++ T+        +  + L+   V+ Y+A ++IG+G +  V  SEI P+ ++    SI  +V+  +S +V+  F  L +  T  G+FF++A I   A +F +
Sbjct:  292 IFRKAGFSVA----IGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGMSMTCMLLGVAFTLQKMQLLSELTPI-LSFICVMMYIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWST-QGTFFIFAGIGGAALLFIW 446          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = -2
Query:    2 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVI----------WAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 490
            IFE  G  +     +      F+   F LVA F +DKIGRR +LL  + GM  +L   +I+   +       +          W + + I  ++ + AF+++G+G +     SE+ P  +R  G S     N   S V++ TFL++ + IT  G+F  +A ++ ++ +F Y C
Sbjct:  363 IFETVGFKNSSAVSIIVSGTNFI---FTLVAFFSIDKIGRRTILLIGLPGMTMALVVCSIAFHFLGIKFDGAVAVVVSSGFSSWGI-VIIVFIIVFAAFYALGIGTVPW-QQSELFPQNVRGIGTSYATATNWAGSLVIASTFLTMLQNITPAGTFAFFAGLSCLSTIFCYFC 530          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR1_RABIT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Oryctolagus cuniculus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = -2
Query:   92 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTF 490
            IFEKAG+    + + AT+  G V T F +V+ F++++ GRR L L  +AGM A    + I+L +++Q    + W   L+I  +  +VAFF +G GPI     +E+     R    ++    N  ++ +V M F
Sbjct:  297 IFEKAGV---QQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAACAVLMTIALALLEQ----LPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNWTSNFIVGMCF 422          
The following BLAST results are available for this feature:
BLAST of CB293836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MSSP1_ARATH3.031e-1430.11Monosaccharide-sensing protein 1 OS=Arabidopsis th... [more]
GLCP_SYNY33.031e-1431.10Glucose transport protein OS=Synechocystis sp. (st... [more]
ITR2_YEAST5.169e-1430.06Myo-inositol transporter 2 OS=Saccharomyces cerevi... [more]
GTR1_CHICK6.752e-1430.06Solute carrier family 2, facilitated glucose trans... [more]
GALP_ECOLI6.752e-1430.52Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL66.752e-1430.52Galactose-proton symporter OS=Escherichia coli O6 ... [more]
GTR1_LEIDO1.152e-1330.06Membrane transporter D1 OS=Leishmania donovani PE=... [more]
EDL17_ARATH2.566e-1329.81Sugar transporter ERD6-like 17 OS=Arabidopsis thal... [more]
ITR1_YEAST3.351e-1327.75Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
GTR1_RABIT3.351e-1332.33Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293836 ID=CB293836; Name=CB293836; organism=Citrus sinensis; type=EST; length=497bp
GACACGTGTAAAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTGACCCTGTTCACCATCACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCATCGTG
ATGGGCCCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAACGGCCCAGATCACCTTTTTGTGTGACTGATCGATGA
CTGTAAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAGTGGTCTTGACAAATCCAACGGCTACAGTAGCGAGTA
ACTTTTCGTCTTTTGACGTAATCCCAGCTTTTTCAAAGATTCTAGGA
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