CB293836

Overview
NameCB293836
Unique NameCB293836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:1085..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = -2
Query:    2 AISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 256
            A+  ++ Y+ FF+ GMGP+    +SEI PL  R+ G +    +N + + +VS+TFL  ++ +T  G+FFLYA  A+V  +F Y C
Sbjct:  479 ALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGC 563          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = -2
Query:    2 AISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 256
            A+  ++ Y+ FF+ GMGP+    +SEI PL  R+ G +    +N + + +VS+TFL  ++ +T  G+FFLYA  A+V  +F Y C
Sbjct:  479 ALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGC 563          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = -2
Query:    2 AISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 256
            A+  ++ Y+ FF+ GMGP+    +SEI PL  R+ G +    +N + + +VS+TFL  ++ +T  G+FFLYA  A+V  +F Y C
Sbjct:  490 ALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFIYGC 574          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR8_MOUSE (Solute carrier family 2, facilitated glucose transporter member 8 OS=Mus musculus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = -2
Query:    5 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVI-----DQSH--------KKVIWAVGLA---ISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 490
            IFE+A    KD  L A+V VG ++  F  VA  ++D+ GRR LL  S   M+ S++       +      + SH        + V   VGLA   + ++  ++A F++G GPI  +  SEI PL ++     I V+ N   + +V+  F S+ + +   G+F+L A+  +++ +F  T
Sbjct:  283 IFEEAKF--KDSSL-ASVTVGIIQVLFTAVAALIMDRAGRRLLLALSGVIMVFSMSAFGTYFKLTQSLPSNSSHVGLVPIAAEPVDVQVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWFMAFLVTKEFSSVMEMLRPYGAFWLTAAFCALSVLFTLT 457          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR3_CHICK (Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 43/133 (32.33%), Postives = 66/133 (49.62%), Query Frame = -2
Query:   92 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTF 490
            IFE+AGIT   + + AT+  G V T F +V+ FL+++ GRR L L  + GM    A + I+L +      K  W   ++I     +VA F IG GPI     +E+     R    ++    N  ++ +V M F
Sbjct:  296 IFERAGIT---QPVYATIGAGVVNTVFTVVSLFLVERAGRRTLHLVGLGGMAVCAAVMTIALAL------KEKWIRYISIVATFGFVALFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGMLF 419          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR3_CANFA (Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = -2
Query:   47 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFL 490
            IF+ AG+   +E + AT+  G V T F +V+ FL+++ GRR L +  + GM      + ISL + D  +    W   + I  +L +VAFF IG GPI     +E+     R    ++    N  ++ +V + F   S A  +G   F+
Sbjct:  295 IFKDAGV---EEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDNYN----WMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLF--PSAAFYLGAYVFI 433          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GLF_ZYMMO (Glucose facilitated diffusion protein OS=Zymomonas mobilis GN=glf PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 44/163 (26.99%), Postives = 83/163 (50.92%), Query Frame = -2
Query:   32 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVG--LAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFL------SLSKAITIGGSFFLYASIA 496
            P++F+  G  + D  LL T+++G V   F ++A+ ++D+ GR+PLL+    GM A +A L               + VG  L +++VL Y+A F +  GP+  V  SE+ P  ++     I V    + + +V+  F       +L++    G S+ ++A+++
Sbjct:  292 PQMFQNLGFGA-DTALLQTISIGVVNFIFTMIASRVVDRFGRKPLLIWGALGMAAMMAVLGCCFW----------FKVGGVLPLASVLLYIAVFGMSWGPVCWVVLSEMFPSSIKGAAMPIAVTGQWLANILVNFLFKVADGSPALNQTFNHGFSYLVFAALS 443          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 42/163 (25.77%), Postives = 75/163 (46.01%), Query Frame = -2
Query:    8 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 496
            P IF KAG+ +     L T+ +G +     + A  L+D++GR+ LL+    G+  SLA L+  L  +  S     W   + +     Y+ F+    GP+  V   E+ P K R        +V    + +VS+ F  +  A+ I   F +++ I  +++ F +
Sbjct:  266 PTIFTKAGLGTS-ASALGTMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLS-ASTAWMTVVFLGV---YIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAF 423          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR4_BOVIN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 45/160 (28.12%), Postives = 79/160 (49.38%), Query Frame = -2
Query:   11 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFF 490
            IFE AG+   ++   AT+  G V T F LV+ FL+++ GRR L L  +AGM      + ++L +++    +V     ++I  +  +VAFF IG GPI     +E+     R    ++    N   + ++ M F  ++ A  +G   FL  ++  + +  F
Sbjct:  313 IFESAGV---EKPAYATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTVALLLLE----RVPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIIGMGFQYVADA--MGPYVFLLFAVLLLGFFIF 463          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: GTR2_BOVIN (Solute carrier family 2, facilitated glucose transporter member 2 OS=Bos taurus GN=SLC2A2 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 39/133 (29.32%), Postives = 68/133 (51.13%), Query Frame = -2
Query:   92 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTF 490
            IF+ AGI+   + + AT+ VG V T F  V+ FL++K GRR L L  ++GM      +++ L ++     K  W   ++++ +  +V+FF IG GPI     +E      R    +I    N   + ++++ F
Sbjct:  327 IFQTAGIS---QPVYATIGVGAVNTVFTAVSVFLVEKAGRRSLFLIGMSGMFVCAIFMSVGLVLL----SKFPWMNYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPAALAIAAFSNWTGNFIIALCF 452          
The following BLAST results are available for this feature:
BLAST of CB293836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MYCT_RAT6.987e-1138.82Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE6.987e-1138.82Proton myo-inositol cotransporter OS=Mus musculus ... [more]
MYCT_HUMAN6.987e-1138.82Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
GTR8_MOUSE6.987e-1129.78Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CHICK6.987e-1132.33Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CANFA6.987e-1130.41Solute carrier family 2, facilitated glucose trans... [more]
GLF_ZYMMO6.987e-1126.99Glucose facilitated diffusion protein OS=Zymomonas... [more]
CSBC_BACSU6.987e-1125.77Probable metabolite transport protein csbC OS=Baci... [more]
GTR4_BOVIN9.125e-1128.13Solute carrier family 2, facilitated glucose trans... [more]
GTR2_BOVIN9.125e-1129.32Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293836 ID=CB293836; Name=CB293836; organism=Citrus sinensis; type=EST; length=497bp
GACACGTGTAAAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTGACCCTGTTCACCATCACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCATCGTG
ATGGGCCCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAACGGCCCAGATCACCTTTTTGTGTGACTGATCGATGA
CTGTAAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAGTGGTCTTGACAAATCCAACGGCTACAGTAGCGAGTA
ACTTTTCGTCTTTTGACGTAATCCCAGCTTTTTCAAAGATTCTAGGA
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