CB293838

Overview
NameCB293838
Unique NameCB293838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.915e-63
Identity = 117/205 (57.07%), Postives = 144/205 (70.24%), Query Frame = -1
Query:  167 ADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDT-AASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 778
            +DGD ISIF S  IWIDH +L  C DGL+DAV GST ITISN++M +HNEVMLLGHSD Y+ D+ M+VTIA+N+FGEGL+QRMPRCRHGYFH+VNN Y  W+MYAIGGSANPTI SQGN + A  N F KEVTKR       +WK WNW+SEGD ++NGA+FTP                A+ +S++ +     G L+C   + C
Sbjct:  188 SDGDGISIFESRDIWIDHCTLEKCYDGLIDAVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSCEIDQAC 392          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.621e-62
Identity = 115/224 (51.34%), Postives = 149/224 (66.52%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAK------SSSMVGSITSGAGALTCRKSRQC 820
            ++  S  H+G RTV+DGD I+IFG++++WIDH S++ C+DG++DA+MGSTAITISN+H T H+EVML G ++    DK+MQ+T+A+NHFG+ L QRMPR R G  HVVNNDYTHWEMYAIGG+ NPTI SQGNR+ AP    +K+VTKR  T   +WK WNW+SE D  LNGAYF                   K        + V  +T  AG L C+  + C
Sbjct:  232 LIIDSEQHFGLRTVSDGDGINIFGATNVWIDHVSMTDCSDGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPIEDSKQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQPGTKVRRLTKDAGTLGCKPGKSC 455          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.678e-59
Identity = 110/218 (50.46%), Postives = 146/218 (66.97%), Query Frame = -1
Query:  167 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKS-SSMVGSITSGAGALTCRKSRQC 817
            VRSSPTH G R  +DGDAI+IFGSS++WIDH  L+ C DGL+D +  STAITISNN+ T H++VMLLGH+D++ +D +M+VT+A+NHFG GL++RMPR R GY HV NN Y  W MYAIGGSA+PTI S+GN + A   +++KEVTKR       W  W WR+  D+  NGA+F P                  +  ++V S+T+ AG L C ++  C
Sbjct:  178 VRSSPTHVGHRKGSDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSYSKEVTKR--EVKGGWNNWRWRTSNDVFKNGAFFVPSGYGSIPLPYSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPC 393          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.882e-59
Identity = 112/219 (51.14%), Postives = 144/219 (65.75%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKS-SSMVGSITSGAGALTCRKSRQC 820
            MVRSSPTH G R  +DGDAI+IFGSS+IWIDH  L+ C DGL+D +  ST ITISNN+ T H++VMLLGH+D + +D +M+VT+A+NHFG GL++RMPR R GY HV NN Y  W MYAIGGSA+PTI S+GN + A   + +KEVTKR       W  W WR+  D+  NGAYF P                  +  ++V S+T+ AG L C ++  C
Sbjct:  177 MVRSSPTHVGHRKGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSNSKEVTKR--EVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSISLPYSSAQRFTVAPGNLVPSLTADAGPLNCNRNGPC 393          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58
Identity = 118/224 (52.68%), Postives = 143/224 (63.84%), Query Frame = -1
Query:  167 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKE------VTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKS-SSMVGSITSGAGALTCRKSRQC 817
            VRSSPTH G R  +DGDAI+IF SSHIWIDH   S C DGL+D +  STA+TISNN+ T H++VMLLGH+D+   DK M+VTIA+NHFG GLI+RMPR R GY HV NN Y  W+MYAIGGSA+PTI S+GN + A  +   K+      VTKR+D +   WK W WR+  D+  NGAYF P                  S  S+V  +TS AG L C   R C
Sbjct:  168 VRSSPTHVGSRKGSDGDAIAIFDSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSKKQVSSFKIVTKRID-SGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLYGRAERFPVSHGSLVPLLTSSAGPLHCYSGRIC 390          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.679e-57
Identity = 116/221 (52.49%), Postives = 138/221 (62.44%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAAS--QWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            ++R S  H G R   +GD ISIF S  IWIDH S+S   DGL+DAV  ST ITISN H T H +VML G +D Y  DK M++T+AYNHFG+ L QRMPRCR G+FH+VNNDYTHWE YAIGGS+  TI SQGNR+ A      KEVT R    AS  +W  W W S+GD + NGA FTP                  + SS VG +T  +GAL+C K R C
Sbjct:  177 LLRESEDHVGLRGSDEGDGISIFSSHDIWIDHISMSRATDGLIDAVAASTNITISNCHFTDHEKVMLFGANDHYVLDKDMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDELLVKEVTYREKLTASVAEWMKWTWISDGDDMENGATFTPSGDQNLLDKIDHLNLIKPEPSSKVGILTKFSGALSCVKGRPC 397          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.052e-56
Identity = 113/221 (51.13%), Postives = 139/221 (62.90%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAAS--QWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            ++R S  H G R   +GDAISIF S  IWIDH S+S   DGL+DAV GST ITISN H T H +VML G +D    D+ M++T+AYNHFG+ L QRMPRCR G+FH+VNNDYTHWE YAIGGS+  TI SQGNR+ A      KEVT R  + +S  +W  W W ++GD   NGA FTP                  + SS VG +T  +GAL+C+  R C
Sbjct:  178 LLRESDDHLGLRGADEGDAISIFNSHDIWIDHISMSRATDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEEDRGMKITLAYNHFGKRLDQRMPRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDKLLVKEVTYREKSTSSVEEWMKWTWITDGDDFENGATFTPSGDQNLLSKIDHLNLIQPEPSSKVGLLTKFSGALSCKIRRPC 398          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.244e-54
Identity = 105/203 (51.72%), Postives = 130/203 (64.04%), Query Frame = -1
Query:  167 DGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 775
            DGD I +F S+H+WIDH  LS C DGL+D ++ STA+TISNN+ T H++VMLLGH DSY  DK M+VTIA+N FG GLI+RMPR R GY HV NN Y  W+MYAIGGSANP I S+GN + AP    +K+VTKR+  A    K W W +  D+ +NGA+F P                    S+V S+TS AG L C   R C
Sbjct:  167 DGDGIRVFQSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQVTKRM-MAGPDSKRWKWGTSRDVFMNGAFFGPPGVIVRPLYKGGEGFRVAHGSLVPSLTSSAGPLRCYVGRIC 368          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.205e-49
Identity = 91/161 (56.52%), Postives = 116/161 (72.05%), Query Frame = -1
Query:  296 DGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 775
            DGDAI++   ++ WIDHNSLS C+DGL+D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+   + S    W WRS  D  +NGAYF
Sbjct:  170 DGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYF 330          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.056e-49
Identity = 91/161 (56.52%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  296 DGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 775
            DGDAI++   ++ WIDHNSLS C+DGL+D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ KEVTKR+     S    W WRS  D   NGAYF
Sbjct:  149 DGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDQWNIYAIGGSSNPTILSEGNSFTAPNESYKKEVTKRIGCETTSACANWVWRSTRDAFTNGAYF 309          
The following BLAST results are available for this feature:
BLAST of CB293838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PEL21_ARATH1.915e-6357.07Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL6_ARATH1.621e-6251.34Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL17_ARATH1.678e-5950.46Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]
PEL16_ARATH4.882e-5951.14Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL2_ARATH1.855e-5852.68Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL_TOBAC2.679e-5752.49Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL56_SOLLC5.052e-5651.13Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL4_ARATH1.244e-5451.72Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
MPAJ1_JUNAS1.205e-4956.52Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPAC1_CUPAR2.056e-4956.52Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06db06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293838 ID=CB293838; Name=CB293838; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTGTGAAGCAGATATACGGTAGAGATTGACACAAT
GACCAGATTGTGGATAAATTGGATAGGTGATATACTATATAGAAGAAAAA
TGAAAAACAAAACAGAAATTCGATGGCCATTTCTTTTTTCGGCCAATTTA
ATGATGAATACTATGAGCACTGACGGCTCTTGCGGCAAGTAAGAGCACCA
GCACCAGAAGTAATGGATCCAACCATGGAGGAAGACTTGGCTCCCAAGCT
TGAAGCACGAGCATAGCTAGCTGAGGCTCCTGCTCCGGATGGGGTAAAGT
AGGCACCGTTCAGCAAGAGGTCTCCTTCAGATCTCCAGTTCCAGCCCTTC
CACTGGCTTGCAGCTGTGTCCACCCTCTTTGTTACCTCCTTTGCGAAGGC
ATTCAATGGAGCATTGTATCTGTTTCCCTGGCTGTTGATGGTGGGGTTTG
CACTTCCACCAATGGCATACATTTCCCAGTGAGTGTAGTCATTGTTCACC
ACATGGAAATAACCATGTCTACACCTTGGCATTCTCTGAATGAGTCCCTC
TCCAAAATGGTTGTAAGCAATGGTTACTTGCATTTGCTTGTCCCTGGTGT
AGGAATCACTGTGACCCAGCAGCATAACCTCATTGTGGTGGGTCATGTGA
TTGTTTGAAATGGTAATGGCAGTAGATCCCATGACGGCATCAACAAGTCC
ATCAGCACAATGGGAGAGTGAATTGTGATCAATCCATATATGGCTAGAGC
CAAAAATTGATATGGCATCACCATCAGCCACTGTCCTCCACCCATAGTGA
GTCGGTGAGCTCCTAACCAT
back to top