CB293838

Overview
NameCB293838
Unique NameCB293838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.056e-49
Identity = 100/206 (48.54%), Postives = 129/206 (62.62%), Query Frame = -1
Query:  164 DGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQCS 775
            DGDAI++   + +WIDHNSLS  +DGLVD  + ST +TISNNH  +H++VMLLGHSD Y+ DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP ++  KEVT+RV   + S    W WRS  D   NGAYF +                  ++ S    +T  AG LTC  S+ CS
Sbjct:  170 DGDAITMRNVTDVWIDHNSLSDSSDGLVDVTLASTGVTISNNHFFNHHKVMLLGHSDIYSDDKSMKVTVAFNQFGPNAGQRMPRARYGLIHVANNNYDPWSIYAIGGSSNPTILSEGNSFTAPNDSDKKEVTRRVGCESPSTCANWVWRSTQDSFNNGAYFVSSGKNEGTNIYNNNEAFKVENGSAAPQLTKNAGVLTCILSKPCS 375          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.812e-49
Identity = 91/161 (56.52%), Postives = 114/161 (70.81%), Query Frame = -1
Query:  296 DGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF 775
            DGDAI++   ++ WIDHNSLS C+DGL+D  +GST ITISNNH  +H++VMLLGH D+Y  DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP   + KEVTKR+   + S    W WRS  D   NGAYF
Sbjct:  170 DGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPNENYKKEVTKRIGCESTSACANWVWRSTRDAFSNGAYF 330          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.473e-47
Identity = 92/205 (44.88%), Postives = 130/205 (63.41%), Query Frame = -1
Query:  167 DGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVD-TAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 775
            DGDA+++  +++IWIDHNS S+ +DGLVD  + ST +TISNN   +H++VMLLGH D+Y+ DK M+VT+A+N FG    QRMPR R+G  HV NN+Y  W +YAIGGS+NPTI S+GN + AP  ++ K+VT R+    +S    W W+S  D+  NGAYF +                  ++ +    +T  AG LTC  S++C
Sbjct:  170 DGDALTLRTATNIWIDHNSFSNSSDGLVDVTLSSTGVTISNNLFFNHHKVMLLGHDDAYSDDKSMKVTVAFNQFGPNCGQRMPRARYGLVHVANNNYDPWTIYAIGGSSNPTILSEGNSFTAPNESYKKQVTIRIGCKTSSSCSNWVWQSTQDVFYNGAYFVSSGKYEGGNIYTKKEAFNVENGNATPQLTKNAGVLTCSLSKRC 374          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.599e-47
Identity = 97/208 (46.63%), Postives = 123/208 (59.13%), Query Frame = -1
Query:  167 RTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 787
            R  +DGDAI + GSS IWIDH +LS   DGLVD   GST +TISN   THH + +LLG SD++ +D +M VT+AYN F   + +RMPRCR G+F +VNN Y  W+ YAIGGS+NPTI SQGN++ AP   + K V  R      +W  WNWR++ D+L NGA F                   A+   MV  +T  AG LTC     C
Sbjct:  190 RHQSDGDAIHVTGSSDIWIDHCTLSKSFDGLVDVNWGSTGVTISNCKFTHHEKAVLLGASDTHFQDLKMHVTLAYNIFTNTVHERMPRCRFGFFQIVNNFYDRWDKYAIGGSSNPTILSQGNKFVAPDFIYKKNVCLRTGAQEPEWMTWNWRTQNDVLENGAIFVASGSDPVLTAEQNAGMMQAEPGDMVPQLTMNAGVLTCSPGAPC 397          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.629e-46
Identity = 98/219 (44.75%), Postives = 131/219 (59.82%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            M++S+      R  +DGDAI++ GSS IWIDH SLS  +DGL+D  +GS+ +T+SN   T H  V+LLG  D++ +DK M  T+A+N F + + QRMPRCR G+F VVNN+Y  W  YAIGGS+ PTI SQGNR+ AP +   K V  R  T  ++   WNWR++ DLL NGA F P                 A+    V  +TS AG L+C +   C
Sbjct:  180 MIKSNDGPPILRQQSDGDAINVAGSSQIWIDHCSLSKASDGLLDITLGSSHVTVSNCKFTQHQFVLLLGADDTHYQDKGMLATVAFNMFTDHVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAPTILSQGNRFFAPDDIIKKNVLARTGTGNAESMSWNWRTDRDLLENGAIFLPSGSDPVLTPEQKAGMIPAEPGEAVLRLTSSAGVLSCHQGAPC 398          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.190e-46
Identity = 100/219 (45.66%), Postives = 128/219 (58.45%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            +++S+      R  +DGDAISI GSS IWIDH SLS   DGLVDA +G+T +T+SN+  T H  V+L G  D    D+ M  T+A+N F + + QRMPRCRHG+F VVNN+Y  W  YAIGGSA+PTI SQGNR+ AP     K V  R   AA++   WNWR+  D+L NGA F                   A+      S+TS AG L+C+    C
Sbjct:  178 LIKSNDGPAAPRAGSDGDAISISGSSQIWIDHCSLSKSVDGLVDAKLGTTRLTVSNSLFTQHQFVLLFGAGDENIEDRGMLATVAFNTFTDNVDQRMPRCRHGFFQVVNNNYDKWGSYAIGGSASPTILSQGNRFCAPDERSKKNVLGRHGEAAAESMKWNWRTNKDVLENGAIFVASGVDPVLTPEQSAGMIPAEPGESALSLTSSAGVLSCQPGAPC 396          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.072e-45
Identity = 97/219 (44.29%), Postives = 126/219 (57.53%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            M++S+      R  +DGD I++ GSS IWIDH SLS   DGLVD  +GST +TISN   T  ++ +LLG  D++ +DK M  T+A+N F + + QRMPRCR G+F VVNN+Y  W  YAIGGS+ PTI  QGNR+ AP +   K V  R  T A++   WNWRS+ DLL NGA F T                 A+       +TS AG  +C     C
Sbjct:  179 MIKSNDGPPILRQASDGDTINVAGSSQIWIDHCSLSKSFDGLVDVTLGSTHVTISNCKFTQQSKAILLGADDTHVQDKGMLATVAFNMFTDNVDQRMPRCRFGFFQVVNNNYDRWGTYAIGGSSAPTILCQGNRFLAPDDQIKKNVLARTGTGAAESMAWNWRSDKDLLENGAIFVTSGSDPVLTPVQSAGMIPAEPGEAAIKLTSSAGVFSCHPGAPC 397          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.528e-36
Identity = 91/209 (43.54%), Postives = 115/209 (55.02%), Query Frame = -1
Query:  167 RTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRV-DTAASQWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 787
            R  +DGDAI I G S IWIDH SLS   DGL+DA  GST  T+SN   T H  ++L    D    ++ M  T+A+N F + + QRMP  RHG+  VVNN+Y  W  YA+GGSA PTI SQGNR+ A  +   KEV  R  ++A S+   WNWRS  D+  NGA F P                 A+    V  +TS AG L+C+    C
Sbjct:  190 RKGSDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGSTHFTVSNCLFTQHQYLLLFWDFD----ERGMLCTVAFNKFTDNVDQRMPNLRHGFVQVVNNNYERWGSYALGGSAGPTILSQGNRFLA--SDIKKEVVGRYGESAMSESINWNWRSYMDVFENGAIFVPSGVDPVLTPEQNAGMIPAEPGEAVLRLTSSAGVLSCQPGAPC 392          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PELA_DICD3 (Pectate lyase A OS=Dickeya dadantii (strain 3937) GN=pelA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = -1
Query:  416 GWRTVADGDAISIFGSSHIWIDHNSLSHCA-----------------DGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYT-RDK-QMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNN-------DYTHWEMYAIGGSANPTINSQGNRY 793
            GW    DG  I+  G+ H+W+DH ++S  +                 DG +D   GS  +TISN+    H++ ML+GHSD+ + +DK ++ VT+  N F   + +R PR R+G  H  NN       D  +  +Y+ G   + ++ S+GN +
Sbjct:  169 GWNAEWDGMNITN-GAHHVWVDHVTISDGSFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDKGKLHVTLFNNVFNR-VTERAPRVRYGSIHSFNNVFNGDVKDPVYRYLYSFGIGTSGSVLSEGNSF 318          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = -1
Query:  380 DAISIFGSSHIWIDHNSLSHCA-----------------DGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDK-QMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDY-------THWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVT 769
            D I+I G +HIWIDH + +  +                 DG  DA  G+  IT+S N+   H++  + G SDS T D  ++++T+ +N + + ++QR PR R G  HV NN Y       ++   YA G   +  I +Q N  + P  + AK ++
Sbjct:  205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS 358          
The following BLAST results are available for this feature:
BLAST of CB293838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
MPAC1_CHAOB2.056e-4948.54Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
MPAJ1_JUNVI7.812e-4956.52Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
SBP_CRYJA1.473e-4744.88Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAA2_AMBAR5.599e-4746.63Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]
MPA12_AMBAR3.629e-4644.75Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
MPA11_AMBAR6.190e-4645.66Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPA13_AMBAR3.072e-4544.29Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR1.528e-3643.54Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
PELA_DICD34.950e-1130.92Pectate lyase A OS=Dickeya dadantii (strain 3937) ... [more]
PEL_BACSU6.465e-1130.97Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293838 ID=CB293838; Name=CB293838; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTGTGAAGCAGATATACGGTAGAGATTGACACAAT
GACCAGATTGTGGATAAATTGGATAGGTGATATACTATATAGAAGAAAAA
TGAAAAACAAAACAGAAATTCGATGGCCATTTCTTTTTTCGGCCAATTTA
ATGATGAATACTATGAGCACTGACGGCTCTTGCGGCAAGTAAGAGCACCA
GCACCAGAAGTAATGGATCCAACCATGGAGGAAGACTTGGCTCCCAAGCT
TGAAGCACGAGCATAGCTAGCTGAGGCTCCTGCTCCGGATGGGGTAAAGT
AGGCACCGTTCAGCAAGAGGTCTCCTTCAGATCTCCAGTTCCAGCCCTTC
CACTGGCTTGCAGCTGTGTCCACCCTCTTTGTTACCTCCTTTGCGAAGGC
ATTCAATGGAGCATTGTATCTGTTTCCCTGGCTGTTGATGGTGGGGTTTG
CACTTCCACCAATGGCATACATTTCCCAGTGAGTGTAGTCATTGTTCACC
ACATGGAAATAACCATGTCTACACCTTGGCATTCTCTGAATGAGTCCCTC
TCCAAAATGGTTGTAAGCAATGGTTACTTGCATTTGCTTGTCCCTGGTGT
AGGAATCACTGTGACCCAGCAGCATAACCTCATTGTGGTGGGTCATGTGA
TTGTTTGAAATGGTAATGGCAGTAGATCCCATGACGGCATCAACAAGTCC
ATCAGCACAATGGGAGAGTGAATTGTGATCAATCCATATATGGCTAGAGC
CAAAAATTGATATGGCATCACCATCAGCCACTGTCCTCCACCCATAGTGA
GTCGGTGAGCTCCTAACCAT
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