CB293839

Overview
NameCB293839
Unique NameCB293839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3406 contig Csv1_Contig3406:183..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.832e-52
Identity = 99/195 (50.77%), Postives = 133/195 (68.21%), Query Frame = 3
Query:  213 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+   ++K LWI+F ++M I+LK  L V   KTIDGRGA+VH+ NGG C+ ++ V++VI+H LH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL+D  +GST I
Sbjct:   18 SCYSDNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGI 206          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPA12_AMBAR (Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.923e-52
Identity = 103/212 (48.58%), Postives = 135/212 (63.68%), Query Frame = 3
Query:  141 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            P   A  VE    ++ E R+    +C   N ID CWRC  +W  NR+ LADC  GF +   GG+ G  Y VT  +DDD  NPK GTLR A  Q++PLWI+FKR+MVI L QEL+VNS KTIDGRG  V+I N G +T+  V N+IIH +++HD K     M++S+      R  +DGDAI++ GSS IWIDH SLS  +DGL+D  +GS+ +
Sbjct:   22 PVRSAEDVEEFLPSANETRR-SLKACEAHNIIDKCWRCKADWANNRQALADCAQGFAKGTYGGKHGDVYTVTSDKDDDVANPKEGTLRFAAAQNRPLWIIFKRNMVIHLNQELVVNSDKTIDGRGVKVNIVNAG-LTLMNVKNIIIHNINIHDIKVCPGGMIKSNDGPPILRQQSDGDAINVAGSSQIWIDHCSLSKASDGLLDITLGSSHV 231          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.988e-51
Identity = 97/195 (49.74%), Postives = 133/195 (68.21%), Query Frame = 3
Query:  213 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G  Y VT+  DDDPVNP PGTLR+   +D+PLWI+F  +M I+LK  + +  +KT DGRGA V+I NGG C+ I+ V+NVIIHGLH++ C  +  GN ++  S    P H       DGDA+++  +++IWIDHNS S+ +DGLVD  + ST +
Sbjct:   18 SCFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNS-DDDPVNPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYIGNGGPCVFIKRVSNVIIHGLHLYGCSTSVLGNVLINESFGVEPVH-----PQDGDALTLRTATNIWIDHNSFSNSSDGLVDVTLSSTGV 206          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.749e-50
Identity = 95/195 (48.72%), Postives = 131/195 (67.18%), Query Frame = 3
Query:  213 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDCKP--TGNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            SC + NPID CWR D NW +NR +LADC +GFG +A+GG+ G FY VT   DDDPVNP PGTLR+   +++ LWI+F +++ I+L   L +   KTIDGRGA VHI NGG C+ ++ V++VI+HGL++H C    +GN ++  +    P H       DGDAI++   + +WIDHNSLS  +DGLVD  + ST +
Sbjct:   18 SCFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVTSS-DDDPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHIGNGGPCLFMRTVSHVILHGLNIHGCNTSVSGNVLISEASGVVPVH-----AQDGDAITMRNVTDVWIDHNSLSDSSDGLVDVTLASTGV 206          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPA13_AMBAR (Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.395e-50
Identity = 98/188 (52.13%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  213 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            +C   N ID CWR   +W  NR+ LADC  GF +   GG+ G  Y VT   DDD  NPK GTLR A  Q++PLWI+FK DMVI L QEL+VNS KTIDGRG  V I NGG +T+  V N+IIH +++HD K     M++S+      R  +DGD I++ GSS IWIDH SLS   DGLVD  +GST +
Sbjct:   44 ACEALNIIDKCWRGKADWENNRQALADCAQGFAKGTYGGKWGDVYTVTSNLDDDVANPKEGTLRFAAAQNRPLWIIFKNDMVINLNQELVVNSDKTIDGRGVKVEIINGG-LTLMNVKNIIIHNINIHDVKVLPGGMIKSNDGPPILRQASDGDTINVAGSSQIWIDHCSLSKSFDGLVDVTLGSTHV 230          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.174e-49
Identity = 94/190 (49.47%), Postives = 129/190 (67.89%), Query Frame = 3
Query:  228 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGG-CITIQFVTNVIIHGLHVHDCKPT--GNAMVRSS----PTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            NPID CWR D NW +NR +LADC +GFG + +GG+ G  Y VT   +D+PVNP PGTLR+   ++K LWI+F ++M I+L+  L V  +KTIDGRGA VH+ NGG C+ ++  ++VI+HGLH+H C  +  G+ +V  S    P H       DGDAI++   ++ WIDHNSLS C+DGL+D  +GST I
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSS-EDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHLGNGGPCLFMRKASHVILHGLHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGI 185          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.575e-48
Identity = 103/210 (49.05%), Postives = 127/210 (60.48%), Query Frame = 3
Query:  141 PDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGST 770
            P   A  ++    ++ E R L   +CGT N ID CWR   +W +NRK LADC  GF +  IGG+DG  Y VT   DDD  NPK GTLR    Q++PLWI+F RDMVI+L +EL +N+ KTIDGRGA V I N G   I  V N+IIH + +HD       +++S       R  +DGDAI I G S IWIDH SLS   DGL+DA  GST
Sbjct:   22 PVRSAEDLQQILPSANETRSLT--TCGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIINAG-FAIYNVKNIIIHNIIMHDIVVNPGGLIKSHDGPPVPRKGSDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGST 228          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.509e-48
Identity = 99/199 (49.75%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  180 NSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            N T R   G   C   N ID CWRC  +W +NR+ L +C  GFG+   GG+ G  Y+VT  +DDD VNPK GTLR    QD+PLWI+F+RDM+I L+QE++V S KTIDGRGA V +  GG IT+  V NVIIH + +HD +      ++S+      R  +DGDAI + GSS IWIDH +LS   DGLVD   GST +
Sbjct:   36 NDTRRSLQG---CEAHNIIDKCWRCKPDWAENRQALGNCAQGFGKATHGGKWGDIYMVTSDQDDDVVNPKEGTLRFGATQDRPLWIIFQRDMIIYLQQEMVVTSDKTIDGRGAKVELVYGG-ITLMNVKNVIIHNIDIHDVRVLPGGRIKSNGGPAIPRHQSDGDAIHVTGSSDIWIDHCTLSKSFDGLVDVNWGSTGV 230          
The following BLAST results are available for this feature:
BLAST of CB293839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MPAJ1_JUNAS6.832e-5250.77Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
MPA12_AMBAR8.923e-5248.58Pollen allergen Amb a 1.2 OS=Ambrosia artemisiifol... [more]
SBP_CRYJA1.988e-5149.74Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAC1_CHAOB3.749e-5048.72Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
MPA13_AMBAR6.395e-5052.13Pollen allergen Amb a 1.3 OS=Ambrosia artemisiifol... [more]
MPAC1_CUPAR3.174e-4949.47Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]
MPA14_AMBAR1.575e-4849.05Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
MPAA2_AMBAR3.509e-4849.75Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293839 ID=CB293839; Name=CB293839; organism=Citrus sinensis; type=EST; length=776bp
GCAGCGTTCTGGCTTCTGTACGTAACGAGCAAGACGTCTCTGTTTCCAGG
AAGATGAAGGCAGAGAGCTCAATGAACTCAACAATGGCGGCCAAGGCTGA
AGTAGTAGCCGAGGCCTTGAGTAAACATGCAGTTGATAACCCAGATGAAA
TTGCTTCAATGGTTGAGATGAGCACCCGCAACAGCACTGAAAGGAGAAAG
TTGGGGTACTTCTCCTGTGGTACTGGTAATCCCATTGATGACTGCTGGCG
CTGTGACGGCAACTGGCACAAGAACCGCAAGCGTCTTGCAGACTGTGGGA
TTGGTTTTGGAAGAAATGCCATTGGTGGCCGTGATGGTCGCTTCTATGTT
GTCACTGACCCAAGGGATGATGACCCTGTTAACCCCAAACCTGGAACTTT
ACGCCATGCTGTTATCCAGGATAAGCCTCTCTGGATTGTTTTCAAGAGGG
ACATGGTGATTCAATTGAAACAGGAACTGATTGTCAATAGCTTCAAGACC
ATTGATGGTCGTGGGGCGAATGTGCACATTGCTAATGGAGGTTGCATCAC
TATCCAATTTGTGACCAATGTGATCATTCACGGTCTTCACGTTCATGACT
GTAAACCCACTGGTAATGCCATGGTTAGGAGCTCACCGACTCACTATGGG
TGGAGGACAGTGGCTGATGGTGATGCCATATCAATTTTTGGCTCTAGCCA
TATATGGATTGATCACAATTCACTCTCCCATTGTGCTGATGGACTTGTTG
ATGCCGTCATGGGATCTACTGCCATT
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