CB293842

Overview
NameCB293842
Unique NameCB293842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1881 contig Csv1_Contig1881:37..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_NITEU (50S ribosomal protein L28 OS=Nitrosomonas europaea GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 479
            RVC  TGK+    + VS +N+KT +R   NLQ ++ W E+  R+++LRL+  AL+T++KNG+D+V    R
Sbjct:    3 RVCQVTGKRPMSGHNVSHANNKTKRRFLPNLQSRRFWLESENRWIRLRLTNAALRTVDKNGIDSVVADMR 72
[Close]
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_BURXL (50S ribosomal protein L28 OS=Burkholderia xenovorans (strain LB400) GN=rpmB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:  270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAR 479
            RVC  TGK     N VS +N+KT +R   NLQ +++W E+  R+V+LR+S   L+ I+KNG+DAV    R
Sbjct:    3 RVCQVTGKAPMSGNNVSHANNKTKRRFLPNLQNRRIWVESENRWVRLRVSNAGLRLIDKNGIDAVLADLR 72
The following BLAST results are available for this feature:
BLAST of CB293842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL28_NITEU6.090e-1142.8650S ribosomal protein L28 OS=Nitrosomonas europaea... [more]
RL28_BURXL7.954e-1145.7150S ribosomal protein L28 OS=Burkholderia xenovora... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293842 ID=CB293842; Name=CB293842; organism=Citrus sinensis; type=EST; length=680bp
GCACTAGGACAAAATACACTGAGGAATCGAAAAGAATGGCAACAATGGCG
ACACCGGGAGGAGTTTTATTGGGAAACACTTCCAATCTACCCTGTCGCCG
CCCACGTCTGTCTCCGAAGTCCATGGTTAAGGTAGTCTCCTCCTCGGAAG
AACTGGGTTTCGTTACTTCACAACTCAGTGGCATCAAAATTTCGTACCGC
CTACCTGACGTGGCCACACCCATTTCCTCTCGTCCTTTCGCCCCGGGTCT
TCAACCTATTGTTGCGCGTAGAGTGTGCCCCTTCACTGGAAAGAAATCAA
ACAAGGCAAACAAAGTTTCCTTCTCTAACCACAAGACAACTAAGCGGCAG
TTTGTTAACCTACAGTATAAGAAGGTTTGGTGGGAGGCCGGCAAGCGTTA
TGTGAAGCTGCGTTTGTCAACAAAGGCATTAAAGACGATAGAGAAAAATG
GATTGGATGCTGTTGCTAAGAAGGCTAGAATAGATCTTCGCAAGGAATGA
TATAGATGGTCTAACTATTTTTACCTATAGCTGTTGGTAAAGCTTGTATG
CTCACTGTTTCTCTCGAAATTTAATTTCATGTTGCACTGTATCTTCTTTT
TGCTTGTTCTGTTGAATTCTTCCCAATTAAATGAGAATACTGATCATTAA
AGCCTCAGGAACCAATAAATCTAAAAAAAA
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