CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2
Query:  299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G    ++   Y  +P  T K ++ DGW +TGD G    +G+    DR  ++I  GGEN+S VE+E+++ T+P + +  VV   D    E   AF+ L     +  +E+E   +C   + ++ VP  +  +++LP+  +GKI +  L+
Sbjct:  366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2
Query:  299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G    ++   Y  +P  T K ++ DGW +TGD G    +G+    DR  ++I  GGEN+S VE+E+++ T+P + +  VV   D    E   AF+ L     +  +E+E   +C   + ++ VP  +  +++LP+  +GKI +  L+
Sbjct:  366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2
Query:  299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G    ++   Y  +P  T K ++ DGW +TGD G    +G+    DR  ++I  GGEN+S VE+E+++ T+P + +  VV   D    E   AF+ L     +  +E+E   +C   + ++ VP  +  +++LP+  +GKI +  L+
Sbjct:  366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM3_PONAB (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Pongo abelii GN=ACSM3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -2
Query:  296 YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE---KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 709
            Y+ +P+ T   ++ + ++ TGD G +  DGY     R+ DVI+S G  +   EVE+ L  +P+V E+AVV+ PD   GE   AF+ L  + +    E   KEI E+ +     Y  P+ V F +ELPKT +GK K+ ELR+
Sbjct:  441 YVDNPSKTASTLRGN-FYITGDRGYMDEDGYFWFVARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRK 580          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM3_HUMAN (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Homo sapiens GN=ACSM3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -2
Query:  296 YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE---KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 709
            Y+ +P+ T   ++ + ++ TGD G +  DGY     R+ DVI+S G  +   EVE+ L  +P+V E+AVV+ PD   GE   AF+ L  + +    E   KEI E+ +     Y  P+ V F +ELPKT +GK K+ ELR+
Sbjct:  441 YVDNPSKTASTLRGN-FYITGDRGYMDKDGYFWFVARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRK 580          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_COPC7 (Acetyl-coenzyme A synthetase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACS-1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -2
Query:  293 DSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKP-----TEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 793
            D E  L+++H   S+   ++      L     P          G+FYTGD      DGY+ IK R  DVI   G  LS+ E+ES L T+  V E AV+   DE  G+   AF++LK E +  P       KE+I   R  +  +  PK +    +LPKT +GKI +  LR++
Sbjct:  467 DVEGVLTIAHPWPSIARTIYGDHQRYLETYMKPY--------PGYFYTGDGAARDEDGYIWIKGRVDDVINVSGHRLSTAEIESALITHTGVAETAVIGTADELTGQAVYAFVTLKPEFKFDPENEAGLSKELILQVRKIIGPFAAPKRIYIVSDLPKTRSGKIMRRILRKI 630          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACS2A_HUMAN (Acyl-coenzyme A synthetase ACSM2A, mitochondrial OS=Homo sapiens GN=ACSM2A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 59/194 (30.41%), Postives = 99/194 (51.03%), Query Frame = -2
Query:  269 GVRTVCFPEIDVIDSESGLSVSHDGASLGEIV--FRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL---EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA-KAMGKSK 832
            G    C+ ++ +ID +  +        +G  V   R   +  GY+ +P+ T   ++ D W   GD G+   DGY +   R+ D+I S G  +   EVE+ L  +PAV E AV++ PD   GE   AF+ L ++    + +   KE+ ++ ++    Y  P+ + F   LPKT TGKI++ +LR+   K  GK++
Sbjct:  384 GTAASCY-DVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRANDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKAR 575          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 52/184 (28.26%), Postives = 97/184 (52.72%), Query Frame = -2
Query:  293 RQGVRTVCFPEID--VIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 838
            R G   +  P ++  ++D ++G  +  +    GE+  R  ++M GY K+   T   +  +GW  TGD+  I  DG++ + DR K++I   G  ++  E+E++L  +P + +AAV+  PD   G+ P A++  K  +    +E EI+ +   ++  Y   + V F   +PK  +GKI + EL ++
Sbjct:  381 RYGASGLLAPNVEGKIVDPDTGRVLGVN--QTGELWIRSPTVMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHPEIADAAVIPIPDMKAGQYPMAYIVRK--VGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIPKNPSGKILRRELTKL 560          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2
Query:  299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G    ++   Y  +P  T K ++ DGW +TGD G    +G+    DR  ++I  GGEN+S VE+E+++ T+P + +  VV   D    E   AF+ L     +  +E+E   +C   + ++ VP  +  +++LP+  +GKI +  L+
Sbjct:  366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_SALAR (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 45/154 (29.22%), Postives = 84/154 (54.55%), Query Frame = -2
Query:  299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G    ++   Y + P+ T K ++ +GW +TGD G    +G+    DR  +++  GGEN+S VE+E+++  +P + +  V+   D+   E   AF+ L     +  TE++   +C   + ++ VP  +  +E+LP+  +GKI K  L+
Sbjct:  366 IGEICIKGIPGKTLFKSYFERPDATAKALEPNGWLHTGDSGYRDEEGFFYFVDRRCNMVKRGGENVSCVELENIIAGHPKIQDVVVIGIKDDIRDEAIKAFVVLNE--GETLTEEDFFTFCEENMAKFKVPSYLEIREDLPRNCSGKIIKKNLK 517          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
CAIC_ECOHS3.057e-1730.52Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO553.057e-1730.52Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECO243.057e-1730.52Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSM3_PONAB3.057e-1737.59Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
ACSM3_HUMAN3.057e-1737.59Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
ACSA_COPC73.057e-1733.72Acetyl-coenzyme A synthetase OS=Coprinopsis cinere... [more]
ACS2A_HUMAN3.057e-1730.41Acyl-coenzyme A synthetase ACSM2A, mitochondrial O... [more]
4CLL2_ARATH3.057e-1728.264-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]
CAIC_SHIFL5.215e-1730.52Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
CAIC_SALAR5.215e-1729.22Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
back to top