CB293848
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_ECOHS (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O9:H4 (strain HS) GN=caiC PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2 Query: 299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751 +GEI +G ++ Y +P T K ++ DGW +TGD G +G+ DR ++I GGEN+S VE+E+++ T+P + + VV D E AF+ L + +E+E +C + ++ VP + +++LP+ +GKI + L+ Sbjct: 366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_ECO55 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=caiC PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2 Query: 299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751 +GEI +G ++ Y +P T K ++ DGW +TGD G +G+ DR ++I GGEN+S VE+E+++ T+P + + VV D E AF+ L + +E+E +C + ++ VP + +++LP+ +GKI + L+ Sbjct: 366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_ECO24 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiC PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2 Query: 299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751 +GEI +G ++ Y +P T K ++ DGW +TGD G +G+ DR ++I GGEN+S VE+E+++ T+P + + VV D E AF+ L + +E+E +C + ++ VP + +++LP+ +GKI + L+ Sbjct: 366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM3_PONAB (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Pongo abelii GN=ACSM3 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -2 Query: 296 YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE---KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 709 Y+ +P+ T ++ + ++ TGD G + DGY R+ DVI+S G + EVE+ L +P+V E+AVV+ PD GE AF+ L + + E KEI E+ + Y P+ V F +ELPKT +GK K+ ELR+ Sbjct: 441 YVDNPSKTASTLRGN-FYITGDRGYMDEDGYFWFVARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRK 580
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM3_HUMAN (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Homo sapiens GN=ACSM3 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 53/141 (37.59%), Postives = 80/141 (56.74%), Query Frame = -2 Query: 296 YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE---KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 709 Y+ +P+ T ++ + ++ TGD G + DGY R+ DVI+S G + EVE+ L +P+V E+AVV+ PD GE AF+ L + + E KEI E+ + Y P+ V F +ELPKT +GK K+ ELR+ Sbjct: 441 YVDNPSKTASTLRGN-FYITGDRGYMDKDGYFWFVARADDVILSSGYRIGPFEVENALNEHPSVAESAVVSSPDPIRGEVVKAFVVLNPDYKSHDQEQLIKEIQEHVKKTTAPYKYPRKVEFIQELPKTISGKTKRNELRK 580
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_COPC7 (Acetyl-coenzyme A synthetase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACS-1 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -2 Query: 293 DSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKP-----TEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 793 D E L+++H S+ ++ L P G+FYTGD DGY+ IK R DVI G LS+ E+ES L T+ V E AV+ DE G+ AF++LK E + P KE+I R + + PK + +LPKT +GKI + LR++ Sbjct: 467 DVEGVLTIAHPWPSIARTIYGDHQRYLETYMKPY--------PGYFYTGDGAARDEDGYIWIKGRVDDVINVSGHRLSTAEIESALITHTGVAETAVIGTADELTGQAVYAFVTLKPEFKFDPENEAGLSKELILQVRKIIGPFAAPKRIYIVSDLPKTRSGKIMRRILRKI 630
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACS2A_HUMAN (Acyl-coenzyme A synthetase ACSM2A, mitochondrial OS=Homo sapiens GN=ACSM2A PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 59/194 (30.41%), Postives = 99/194 (51.03%), Query Frame = -2 Query: 269 GVRTVCFPEIDVIDSESGLSVSHDGASLGEIV--FRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL---EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA-KAMGKSK 832 G C+ ++ +ID + + +G V R + GY+ +P+ T ++ D W GD G+ DGY + R+ D+I S G + EVE+ L +PAV E AV++ PD GE AF+ L ++ + + KE+ ++ ++ Y P+ + F LPKT TGKI++ +LR+ K GK++ Sbjct: 384 GTAASCY-DVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQFMGRANDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKAR 575
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17 Identity = 52/184 (28.26%), Postives = 97/184 (52.72%), Query Frame = -2 Query: 293 RQGVRTVCFPEID--VIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 838 R G + P ++ ++D ++G + + GE+ R ++M GY K+ T + +GW TGD+ I DG++ + DR K++I G ++ E+E++L +P + +AAV+ PD G+ P A++ K + +E EI+ + ++ Y + V F +PK +GKI + EL ++ Sbjct: 381 RYGASGLLAPNVEGKIVDPDTGRVLGVN--QTGELWIRSPTVMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHPEIADAAVIPIPDMKAGQYPMAYIVRK--VGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIPKNPSGKILRRELTKL 560
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_SHIFL (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella flexneri GN=caiC PE=3 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17 Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = -2 Query: 299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751 +GEI +G ++ Y +P T K ++ DGW +TGD G +G+ DR ++I GGEN+S VE+E+++ T+P + + VV D E AF+ L + +E+E +C + ++ VP + +++LP+ +GKI + L+ Sbjct: 366 IGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE--GETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_SALAR (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiC PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17 Identity = 45/154 (29.22%), Postives = 84/154 (54.55%), Query Frame = -2 Query: 299 LGEIVFRG---GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751 +GEI +G ++ Y + P+ T K ++ +GW +TGD G +G+ DR +++ GGEN+S VE+E+++ +P + + V+ D+ E AF+ L + TE++ +C + ++ VP + +E+LP+ +GKI K L+ Sbjct: 366 IGEICIKGIPGKTLFKSYFERPDATAKALEPNGWLHTGDSGYRDEEGFFYFVDRRCNMVKRGGENVSCVELENIIAGHPKIQDVVVIGIKDDIRDEAIKAFVVLNE--GETLTEEDFFTFCEENMAKFKVPSYLEIREDLPRNCSGKIIKKNLK 517 The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 334
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bpback to top |