CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 60/151 (39.74%), Postives = 92/151 (60.93%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            GEI+ +G S+  GYL +   T     D GWF TGD+G +  +G+L + +R  D+IISGGEN+   E+E V+    AV E AV+ +PD+ WG  P AF+  +   +    E E+   C+  L  Y +PK ++  E+LPKT++GKI++ +L+E
Sbjct:  318 GEILLKGPSITPGYLHNKKATEASFVD-GWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVIGEYVAVKEVAVIGQPDDKWGSVPVAFIVAEETFD----EDELQLICQTNLASYKIPKQIIIVEKLPKTASGKIQRNKLKE 463          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.617e-26
Identity = 62/149 (41.61%), Postives = 92/149 (61.74%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GEI  +G ++M GYLK+     K   +DGWF TGD+G    DG+L + DR  D+IISGGEN+   EVE+VL ++P V EA V    D+ WG+ P A+L   + ++    E+E+ E+C+ RL  Y VPK   F + LP+ ++ K+ + +L
Sbjct:  335 GEITVKGPTVMKGYLKN-EAANKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAGVKGVDDKTWGKVPHAYLVADSPVD----EEELSEFCKERLASYKVPKAFHFVDRLPRNASNKLMRHKL 478          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.112e-26
Identity = 74/191 (38.74%), Postives = 108/191 (56.54%), Query Frame = -2
Query:  296 ERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYL-KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETP--CAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 859
            E+  ++  QG R     E+ +++ E G+ +  DG S G ++ RG  ++  Y   DP  T      DGWF TGDV  I +DG++ I DR+KD+I SGGE +S+VE+ES+   +P + +AAV+A   E W E P   A  S  +EL    T  E+  Y   ++ R+ +P   +F EELP+  TGKI K  LRE
Sbjct:  351 EKLSLRKSQG-RPPYGVELKIVNDE-GIRLPEDGRSKGNLMARGHWVIKDYFHSDPGSTLS----DGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVELESIAIAHPHIVDAAVIAARHEKWDERPLLIAVKSPNSEL----TSGEVCNYFADKVARWQIPDAAIFVEELPRNGTGKILKNRLRE 531          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSF2_PONAB (Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.112e-26
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            GE+  RG  +MLGY  +P  T + +  D W+ TGDV  ++  G+ +I  RSKD+II GGEN+   E+E   +T+P V E  VV   D+  GE  CA + LK    ++ T +EI  +C+ ++  + +P+ +VF    P T +GKI+KF+LRE
Sbjct:  459 GELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKD--GEETTVEEIKAFCKGKISHFKIPRYIVFVTNYPLTISGKIQKFKLRE 607          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSF2_MACFA (Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.112e-26
Identity = 63/188 (33.51%), Postives = 107/188 (56.91%), Query Frame = -2
Query:  296 ERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 859
            +    K+    R +   E  +++ E+G+    +  + GE+  RG  +MLGY  +P  T + +  D W+ TGD+  ++  G+ +I  RSKD+II GGEN+   E+E   +T+P V E  VV   D+  GE  CA + LK    ++ T +E+  +C+ ++  + +P+ +VF    P T++GKI+KF+LRE
Sbjct:  427 DTVEQKAESVGRIMPHTEARIMNMEAGMLAELN--TPGELCIRGYCVMLGYWGEPQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKD--GEETTAEEMKAFCKGKISHFKIPRYIVFVTNYPLTTSGKIQKFKLRE 610          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LCFA_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 64/151 (42.38%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            GEI+ +G  +M GY   P  T   ++D GW +TGD+G +  +G+  I DR KD+II+GG N+   EVE  LY + A+ E  V   PD + GET  AF+ LK     K   +E+  + R+RL  Y VPK   F++ELPKT+ GKI +  L E
Sbjct:  404 GEIIVKGPQVMKGYWNKPEETAAVLRD-GWLFTGDMGYMDEEGFFYIADRKKDIIIAGGYNIYPREVEEALYEHEAIQEIVVAGVPDSYRGETVKAFVVLKK--GAKADTEELDAFARSRLAPYKVPKAYEFRKELPKTAVGKILRRRLLE 551          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_LISMF (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=menE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.146e-26
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            GEI+ +G S+  GYL +   T     D GWF TGD+G +  +G+L + +R  D+IISGGEN+   E+E V+     V E AV+ +PD+ WG  P AF+  +   +    E E+   C   L  Y +PK +   E+LPKT++GKI++ +L+E
Sbjct:  318 GEILLKGPSITPGYLHNKKATEASFVD-GWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEYEGVKEVAVIGKPDDKWGSVPVAFIVAEETFD----EAELRLICETNLAGYKIPKQITIVEKLPKTASGKIQRNKLKE 463          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.048e-25
Identity = 63/160 (39.38%), Postives = 96/160 (60.00%), Query Frame = -2
Query:  269 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSK 748
            GE+  RG  +MLGY + P+ T + +K+ GW +TGD+ V+  +G+L I DR KD+I+  G N+   E+E V+  +P V E A V  P    GE    F+  K   +   TE+ ++ +CR +L  Y VPK V F++ELPK++ GKI + ELR+ A+    +K
Sbjct:  405 GELCVRGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKK---DPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNK 560          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSF2_RAT (Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.369e-25
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            GE+  RG  +M GY  +P  T + +  D W+ TGD+  +   G+  I  RSKD+II GGEN+   E+E   + +P V EA VV   D+  GE  CA + LK+   +  TE+EI  +C+ ++  + +P+ +VF E  P T +GKI+KF+LRE
Sbjct:  459 GELCIRGYCVMQGYWGEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRLKS--GETTTEEEIKAFCKGKISHFKIPRYIVFVEGYPLTVSGKIQKFKLRE 607          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.335e-25
Identity = 62/160 (38.75%), Postives = 96/160 (60.00%), Query Frame = -2
Query:  269 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSK 748
            GE+  +G  +MLGY + P+ T + +K+ GW +TGD+ V+  +G+L I DR KD+I+  G N+   E+E V+  +P V E A V  P    GE    F+  K   +   TE+ ++ +CR +L  Y VPK V F++ELPK++ GKI + ELR+ A+    +K
Sbjct:  405 GELCVKGPQVMLGYWQRPDATDEIIKN-GWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKK---DPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNK 560          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
MENE_LISMO1.238e-2639.742-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
MENE_BACLD1.617e-2641.612-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
ALKK_PSEOL2.112e-2638.74Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
ACSF2_PONAB2.112e-2639.74Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_MACFA2.112e-2633.51Acyl-CoA synthetase family member 2, mitochondrial... [more]
LCFA_BACSU2.759e-2642.38Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
MENE_LISMF6.146e-2639.072-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
LCFA_ECO571.048e-2539.38Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
ACSF2_RAT1.369e-2539.74Acyl-CoA synthetase family member 2, mitochondrial... [more]
LCFA_ECOLI2.335e-2538.75Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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