CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_SHEPA (Acetyl-coenzyme A synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  L + EVES L  +  V EAAVV  P +  G+   A+++L K  +E +   +E+ ++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVAHELVAEAAVVGYPHDIKGQGIYAYVTLTKGSVETEELRQELRQWVRKEIGALATPDLIQWAGGLPKTRSGKIMRRFLRKIA 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_SHEHH (Acetyl-coenzyme A synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  L + EVES L  +  V EAAVV  P +  G+   A+++L K  +E +   +E+ ++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGAKRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVAHEFVAEAAVVGYPHDIKGQGIYAYVTLTKGSVETEELRQELRQWVRKEIGALATPDLIQWAGGLPKTRSGKIMRRFLRKIA 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_RHISN (Acetyl-coenzyme A synthetase OS=Rhizobium sp. (strain NGR234) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = -2
Query:  287 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKA-ELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 664
            G ++TGD      DGY  I  R  DV+   G  L + EVES L ++  V+EAAVV  P    G+    ++SL A E+      +E++++ R+ +     P  + F   LPKT +GKI +  LR++A+
Sbjct:  494 GKYFTGDGCRRDEDGYYWITGRVDDVLNVSGHRLGTAEVESALVSHHLVSEAAVVGYPHPIKGQGIYCYVSLMAGEVGSDELRQELVKHVRSEIGPIATPDKIQFAPGLPKTRSGKIMRRILRKIAE 620          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_PSYIN (Acetyl-coenzyme A synthetase OS=Psychromonas ingrahamii (strain 37) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 42/126 (33.33%), Postives = 67/126 (53.17%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD     +DGY  I  R  DV+   G  + + E+ES L ++P + EAAVV  P E  G+   A+++L + E        E+ ++ R  +     P  + + E LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGARRDSDGYYWITGRVDDVLNVSGHRMGTAEIESALVSHPKIAEAAVVGVPHEIKGQGIYAYVTLNEGEYPSPELYAEVKQWVRKEIGAIATPDILHWAEGLPKTRSGKIMRRILRKIA 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_PSYA2 (Acetyl-coenzyme A synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 54/176 (30.68%), Postives = 83/176 (47.16%), Query Frame = -2
Query:  290 DVIDSESGLSVSHDGASLGEIVFRG---GSMMLGYLKDPNGTRKCMKD-DGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLK-AELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 802
            +VID++    V+ +GA+ G +V  G   G M   Y            +  G+++TGD      DG+  I  R  DV+   G  L + E+ES +  +PA  EAAVV  P +  G   CAF+ LK +E   +  + E+  + R  +        +     LPKT +GKI +  LR +A
Sbjct:  449 EVIDTDG---VALEGAAEGNLVINGSWPGQMRTIYKDHARFLETYFTEYPGYYFTGDGVQRDEDGHYWITGRVDDVLNVSGHRLGTAEIESAIVAHPATAEAAVVGMPHDIRGIGICAFVILKSSETATESLKAELNRHVRTEIGPIANLDAIYMVNVLPKTRSGKIMRRILRSLA 621          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_METRJ (Acetyl-coenzyme A synthetase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = -2
Query:  287 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLK-AELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 664
            G ++TGD     ADGY  I  R  DVI   G  + + EVES L  +P V EAAVV  P    G+   A+++L   E       KE++ + R  +     P  + F   LPKT +GKI +  LR++A+
Sbjct:  493 GKYFTGDGARRDADGYYWITGRVDDVINVSGHRMGTAEVESSLVAHPKVAEAAVVGYPHNVKGQGIYAYVTLNDGEEGDDALRKELVTWVRKDIGPIASPDLIQFAPGLPKTRSGKIMRRILRKIAE 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURS3 (Acetyl-coenzyme A synthetase OS=Burkholderia sp. (strain 383) GN=acsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 47/129 (36.43%), Postives = 66/129 (51.16%), Query Frame = -2
Query:  287 FYTGDVGVIHAD-GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 658
            +  GD  V   D GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++   ++     PK + F + LPKT +GKI +  LR +AK
Sbjct:  508 YLAGDGTVRDKDTGYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKQIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACBG1_BOVIN (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos taurus GN=ACSBG1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.919e-11
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  395 VSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII-SGGENLSSVEVESVLYTN-PAVNEAAVVARPDEFWGETPCAFLSLKAELEK---KPTE---KEIIEYCR 772
            V+ D   +GEI   G ++ +GYL   + T + +  +GW +TGD G + ADG+L I  R K++II +GGEN+  V +E  + T  P +  A ++    +F        L+LK  L+    +PT+   ++ +E+C+
Sbjct:  491 VNEDAEGIGEICLWGRTIFMGYLNMEDKTCEAIDAEGWLHTGDTGRLDADGFLYITGRLKELIITAGGENVPPVPIEEAVKTELPIIRNAMLIGDQRKFLS----MLLTLKCTLDPDTFEPTDNLTEQAVEFCQ 620          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_SHESH (Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  L + EVES L  +  V EAAVV  P +  G+   A+++L K  +E +   +E+ ++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGAKRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVAHEHVAEAAVVGYPHDIKGQGIYAYVTLTKGTIETEELRQELRKWVRKEIGALATPDLIQWAGGLPKTRSGKIMRRFLRKIA 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_SHEFN (Acetyl-coenzyme A synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=acsA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 46/128 (35.94%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE---KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  L + EVES L ++  V EAAVV  P +  G+   A+++L   +E  PTE   +E+ ++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVSHELVAEAAVVGYPHDIKGQGIYAYVTLTRGIE--PTEELRQELRQWVRKEIGALATPDLIQWASGLPKTRSGKIMRRFLRKIA 619          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
ACSA_SHEPA1.919e-1134.92Acetyl-coenzyme A synthetase OS=Shewanella pealean... [more]
ACSA_SHEHH1.919e-1134.92Acetyl-coenzyme A synthetase OS=Shewanella halifax... [more]
ACSA_RHISN1.919e-1134.65Acetyl-coenzyme A synthetase OS=Rhizobium sp. (str... [more]
ACSA_PSYIN1.919e-1133.33Acetyl-coenzyme A synthetase OS=Psychromonas ingra... [more]
ACSA_PSYA21.919e-1130.68Acetyl-coenzyme A synthetase OS=Psychrobacter arct... [more]
ACSA_METRJ1.919e-1136.22Acetyl-coenzyme A synthetase OS=Methylobacterium r... [more]
ACSA_BURS31.919e-1136.43Acetyl-coenzyme A synthetase OS=Burkholderia sp. (... [more]
ACBG1_BOVIN1.919e-1132.09Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Bos ta... [more]
ACSA_SHESH2.507e-1134.92Acetyl-coenzyme A synthetase OS=Shewanella sedimin... [more]
ACSA_SHEFN2.507e-1135.94Acetyl-coenzyme A synthetase OS=Shewanella frigidi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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