CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: BGM_DROME (Very long-chain-fatty-acid--CoA ligase bubblegum OS=Drosophila melanogaster GN=bgm PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 42/153 (27.45%), Postives = 78/153 (50.98%), Query Frame = -2
Query:  419 MKSRQGVRTVCFPEIDVIDS--------ESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII-SGGENLSSVEVESVLYTN-PAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE 847
            M    G  T+C P+   +++        ES   ++ D    GE+  RG  + +GY+ +   T + + DD W ++GD+G +   GY+ +  RSK++II +GGEN+  V +E+ +     A++ A +V    ++        ++LK E++K   E
Sbjct:  421 MSETAGCHTICLPDSVGLNTIGKTLPGCESKF-INKDANGHGELCIRGRHVFMGYIDNKEKTEESLDDDCWLHSGDLGFVDDKGYVSLTGRSKEIIITAGGENIPPVHIENTIKKELDAISNAFLVGEQRKYL----TVLITLKTEVDKDSGE 568          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_MYCTU (Acetyl-coenzyme A synthetase OS=Mycobacterium tuberculosis GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 52/152 (34.21%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  287 SMMLGYLKDP----NGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL--EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 724
            SM+ G   DP    +       D G+++ GD   I  DG + +  R  DV+   G  +S+ EVES L  +  V EAAVV   DE   +  CAF+ L+A      +  E+   E  R   P    P+ V    ELPKT +GKI +  LR++A+
Sbjct:  478 SMLRGIWGDPARYWHSYWSKFSDKGYYFAGDGARIDPDGAIWVLGRIDDVMNVSGHRISTAEVESALVAHSGVAEAAVVGVTDETTTQAICAFVVLRANYAPHDRTAEELRTEVARVISP-IARPRDVHVVPELPKTRSGKIMRRLLRDVAE 628          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_MYCBO (Acetyl-coenzyme A synthetase OS=Mycobacterium bovis GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 52/152 (34.21%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  287 SMMLGYLKDP----NGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL--EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 724
            SM+ G   DP    +       D G+++ GD   I  DG + +  R  DV+   G  +S+ EVES L  +  V EAAVV   DE   +  CAF+ L+A      +  E+   E  R   P    P+ V    ELPKT +GKI +  LR++A+
Sbjct:  478 SMLRGIWGDPARYWHSYWSKFSDKGYYFAGDGARIDPDGAIWVLGRIDDVMNVSGHRISTAEVESALVAHSGVAEAAVVGVTDETTTQAICAFVVLRANYAPHDRTAEELRTEVARVISP-IARPRDVHVVPELPKTRSGKIMRRLLRDVAE 628          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_HALHL (Acetyl-coenzyme A synthetase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKA-ELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  + + EVES L  +  V+EAAVV  P +  G+   A+++L A E      ++E+++ C   +     P  + F   LPKT +GKI +  LR++A
Sbjct:  491 GKYFTGDGARRDEDGYYWITGRVDDVINVSGHRMGTAEVESALVLHDKVSEAAVVGYPHDVKGQGIYAYVTLMAGEEPSDELKQELVKLCIQEIGPIAKPDIIQFAPGLPKTRSGKIMRRILRKVA 616          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURPS (Acetyl-coenzyme A synthetase OS=Burkholderia pseudomallei GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  287 GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 622
            GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++    +     PK + F + LPKT +GKI +  LR +AK
Sbjct:  521 GYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURP6 (Acetyl-coenzyme A synthetase OS=Burkholderia pseudomallei (strain 668) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  287 GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 622
            GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++    +     PK + F + LPKT +GKI +  LR +AK
Sbjct:  521 GYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURP1 (Acetyl-coenzyme A synthetase OS=Burkholderia pseudomallei (strain 1710b) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  287 GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 622
            GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++    +     PK + F + LPKT +GKI +  LR +AK
Sbjct:  521 GYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURP0 (Acetyl-coenzyme A synthetase OS=Burkholderia pseudomallei (strain 1106a) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  287 GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 622
            GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++    +     PK + F + LPKT +GKI +  LR +AK
Sbjct:  521 GYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURMS (Acetyl-coenzyme A synthetase OS=Burkholderia mallei (strain SAVP1) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  287 GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 622
            GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++    +     PK + F + LPKT +GKI +  LR +AK
Sbjct:  521 GYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_BURMA (Acetyl-coenzyme A synthetase OS=Burkholderia mallei GN=acsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = -2
Query:  287 GYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL----EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 622
            GY  I  R  DV+   G  L ++E+ES L ++  V EAAVV RPD+  GE   AF+ LK       E     K + ++    +     PK + F + LPKT +GKI +  LR +AK
Sbjct:  521 GYFTIMGRIDDVLNVSGHRLGTMEIESALVSHELVAEAAVVGRPDDTTGEAVVAFVVLKRSRPEGEEAAALAKTLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRSLAK 636          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
BGM_DROME4.276e-1127.45Very long-chain-fatty-acid--CoA ligase bubblegum O... [more]
ACSA_MYCTU4.276e-1134.21Acetyl-coenzyme A synthetase OS=Mycobacterium tube... [more]
ACSA_MYCBO4.276e-1134.21Acetyl-coenzyme A synthetase OS=Mycobacterium bovi... [more]
ACSA_HALHL4.276e-1134.92Acetyl-coenzyme A synthetase OS=Halorhodospira hal... [more]
ACSA_BURPS4.276e-1137.07Acetyl-coenzyme A synthetase OS=Burkholderia pseud... [more]
ACSA_BURP64.276e-1137.07Acetyl-coenzyme A synthetase OS=Burkholderia pseud... [more]
ACSA_BURP14.276e-1137.07Acetyl-coenzyme A synthetase OS=Burkholderia pseud... [more]
ACSA_BURP04.276e-1137.07Acetyl-coenzyme A synthetase OS=Burkholderia pseud... [more]
ACSA_BURMS4.276e-1137.07Acetyl-coenzyme A synthetase OS=Burkholderia malle... [more]
ACSA_BURMA4.276e-1137.07Acetyl-coenzyme A synthetase OS=Burkholderia malle... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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