CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_SHEB8 (Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  L + EVES L ++  V EAAVV  P +  G+   A+++L +   E +   +E+ ++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVSHELVAEAAVVGYPHDIKGQGIYAYVTLTRGTEETEELRQELRQWVRKEIGALATPDLIQWATGLPKTRSGKIMRRFLRKIA 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_SHEB5 (Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DVI   G  L + EVES L ++  V EAAVV  P +  G+   A+++L +   E +   +E+ ++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  494 GMYFTGDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVSHELVAEAAVVGYPHDIKGQGIYAYVTLTRGTEETEELRQELRQWVRKEIGALATPDLIQWATGLPKTRSGKIMRRFLRKIA 619          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSA_MARAV (Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  290 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL-KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 664
            G ++TGD      DGY  I  R  DV+   G  L + EVES L  +  V EAAVV  P +  G+    +++L + E      +KE++++ R  +     P  + +   LPKT +GKI +  LR++A
Sbjct:  495 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEVESALVAHDKVAEAAVVGYPHDIKGQGIYVYVTLVQGEEPSDELKKELVQWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILRKIA 620          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACBG1_RAT (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus norvegicus GN=Acsbg1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 41/134 (30.60%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  395 VSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII-SGGENLSSVEV-ESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE------KEIIEYCR 772
            V+ D   +GEI   G ++ +GYL   + T + +  +GW +TGD+G +  DG+L I  R K++II +GGEN+  V + E+V    P ++ A ++    +F        L+LK  L  + +E      ++ +E+C+
Sbjct:  505 VNQDADGIGEICLWGRTIFMGYLNMEDKTHEAIDSEGWLHTGDMGRLDDDGFLYITGRLKELIITAGGENVPPVPIEEAVKMELPIISSAMLIGDQRKFLS----MLLTLKCTLNPETSEPTDNLTEQAVEFCQ 634          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
ACSA_SHEB89.526e-1134.13Acetyl-coenzyme A synthetase OS=Shewanella baltica... [more]
ACSA_SHEB59.526e-1134.13Acetyl-coenzyme A synthetase OS=Shewanella baltica... [more]
ACSA_MARAV9.526e-1133.33Acetyl-coenzyme A synthetase OS=Marinobacter aquae... [more]
ACBG1_RAT9.526e-1130.60Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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