CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig335 contig Csv1_Contig335:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 65/189 (34.39%), Postives = 106/189 (56.08%), Query Frame = -2
Query:  299 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 865
            A E  ++KS      V   E+ ++D ++G S+  + +  GEI  RG  +M GYL DP  T+  + +DGW +TGD+G +  D  + I DR K++I   G  +   E+E++L T+P + +AAVV+  D+  GE P AF+ ++ E   + TE EI ++    +  Y     V F + +PK  +GKI + +LR
Sbjct:  348 AKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQS--GEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFI-VRTE-GSEITEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLR 532          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_BACA2 (2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.281e-23
Identity = 57/154 (37.01%), Postives = 88/154 (57.14%), Query Frame = -2
Query:  287 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 748
            GEI  +G ++M GY    +  +    + GWF TGD+G +  +G+L + DR  D+IISGGEN+   EVE+ L  +PAV EA V    D  WG+ P AFL L + +    + +E+  +CR RL +Y +P      + LP+ ++ K+ +  L E+ K
Sbjct:  335 GEITVKGPNVMKGYYHRDDANQAAFHN-GWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIYPAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLVLTSSV----SSEELTAFCRERLAKYKIPAAFFEVDGLPRNASNKLMRHRLNELRK 483          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = -2
Query:  287 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 748
            GEI+ +G ++M  Y    +      ++ GW  TGD+G +  +G+L + DR  D+IISGGEN+   EVESVL ++PAV EA V    D+ WG+ P A+L     L K  +  E+ +YC+ RL +Y +P      + LP+ ++ K+ + +L++  K
Sbjct:  334 GEIMVKGPNVMKSYFNRESANEASFQN-GWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKKWGKVPHAYL----VLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLPRNASNKLLRNQLKDARK 482          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_LACLA (2-succinylbenzoate--CoA ligase OS=Lactococcus lactis subsp. lactis GN=menE PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.360e-23
Identity = 59/156 (37.82%), Postives = 91/156 (58.33%), Query Frame = -2
Query:  299 DGASLGEIVFRGGSMMLGYL-KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 763
            D A +GEI  +   +M  YL + P GT         F TGD+G +  DG+L + +R KD+IISGGEN+   E+E ++Y+ P + E A+VA+PD  WG+ P  F+S     EK      +  +   +L +Y  P+++ F +ELPK ++GKI + EL+
Sbjct:  309 DLAGVGEIWLKSPMLMKAYLGQKPYGTA--------FETGDIGYLDTDGFLYLLNRRKDIIISGGENIYPKEIEDLVYSLPEIKECALVAKPDAKWGQVPILFVSGNISQEK------LENFLTEKLAKYKRPQSITFMDELPKNASGKILRKELK 450          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 62/175 (35.43%), Postives = 102/175 (58.29%), Query Frame = -2
Query:  284 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKA 808
            +I ++D+E+G S+ H+ A  GEI  RG  +M GY+ DP  T   + ++GW +TGDV  I  D  + I DR K++I   G  ++  E+E++L  +P++ +AAVV +  E  GE P AF+   +E+    +E+EI E+   ++  Y     V F + +PK+ +GKI + +LR    A
Sbjct:  368 QIKILDTETGESLPHNQA--GEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEEAGEVPVAFVVKSSEI----SEQEIKEFVAKQVIFYKKIHRVYFVDAIPKSPSGKILRKDLRSRLAA 536          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.085e-22
Identity = 64/170 (37.65%), Postives = 98/170 (57.65%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D E+G S+  +    GEI  RG  +M GYL DP  T + +  +GW +TGD+G I  D  L I DR K++I   G  ++  E+E++L T+P +++AAVV   DE  GE P AF+ +K+      TE EI ++   ++  Y     V F E +PK  +GKI + +LR
Sbjct:  377 EMKIVDPETGSSLPRNHP--GEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPCISDAAVVPMKDEAAGEVPVAFV-VKSN-GHNITEDEIKQFISKQVIFYKRINRVFFVEAIPKAPSGKILRKDLR 542          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.417e-22
Identity = 67/189 (35.45%), Postives = 103/189 (54.50%), Query Frame = -2
Query:  299 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 865
            A E   +KS      V   E+ ++D E+  S+  +    GEI  RG  +M GYL DP  TR  + ++GW +TGD+G I  D  L I DR K++I   G  ++  E+E++L T+P +++AAVV   DE  GE P AF+          TE+EI ++   ++  Y     V F + +PK+ +GKI + +LR
Sbjct:  350 AKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRN--QRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGF--TTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLR 534          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.417e-22
Identity = 67/189 (35.45%), Postives = 103/189 (54.50%), Query Frame = -2
Query:  299 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 865
            A E   +KS      V   E+ ++D E+  S+  +    GEI  RG  +M GYL DP  TR  + ++GW +TGD+G I  D  L I DR K++I   G  ++  E+E++L T+P +++AAVV   DE  GE P AF+          TE+EI ++   ++  Y     V F + +PK+ +GKI + +LR
Sbjct:  350 AKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRN--QRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLLTHPTISDAAVVPMIDEKAGEVPVAFVVRTNGF--TTTEEEIKQFVSKQVVFYKRIFRVFFVDAIPKSPSGKILRKDLR 534          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL1_SOYBN (4-coumarate--CoA ligase 1 (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.417e-22
Identity = 62/170 (36.47%), Postives = 98/170 (57.65%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D E+G S+  + +  GEI  RG  +M GYL D   T + +  DGW +TGD+G I  D  L I DR K++I   G  ++  E+E++L T+P +++AAVV   DE  GE P AF+ + +      TE EI ++   ++  Y     V F + +PK+ +GKI + +LR
Sbjct:  118 EMKIVDPETGHSLPRNQS--GEICIRGDQIMKGYLNDGEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVI-SNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLR 284          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.156e-22
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D ++G S+  +    GEI  RG  +M GYL DP  T + +  +GW +TGD+G I  D  L I DR K++I   G  ++  E+E++L  +P +++AAVV   DE  GE P AF  +        TE E+ ++   ++  Y   K V F E +PK+ +GKI + +LR
Sbjct:  373 EMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPVAF--VVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLR 538          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
4CL3_ORYSJ5.752e-2434.39Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
MENE_BACA21.281e-2337.012-succinylbenzoate--CoA ligase OS=Bacillus amyloli... [more]
MENE_BACSU2.855e-2336.362-succinylbenzoate--CoA ligase OS=Bacillus subtili... [more]
MENE_LACLA6.360e-2337.822-succinylbenzoate--CoA ligase OS=Lactococcus lact... [more]
4CL_PINTA8.306e-2335.434-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL_VANPL1.085e-2237.654-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL2_PETCR1.417e-2235.454-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR1.417e-2235.454-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_SOYBN2.417e-2236.474-coumarate--CoA ligase 1 (Fragment) OS=Glycine ma... [more]
4CL1_TOBAC3.156e-2235.884-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
back to top