CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig335 contig Csv1_Contig335:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.122e-22
Identity = 66/189 (34.92%), Postives = 103/189 (54.50%), Query Frame = -2
Query:  299 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 865
            A E   +KS      V   E+ ++D ++G S+  + +  GEI  RG  +M GYL DP  T + +  +GW YTGD+G I  D  L I DR K++I   G  ++  E+E++L  +P +++AAVV   DE  GE P AF  +        TE E+ ++   ++  Y   K V F + +PK+ +GKI + +LR
Sbjct:  349 AKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQS--GEICIRGDQIMKGYLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAGEVPVAF--VVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLR 533          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.184e-22
Identity = 59/178 (33.15%), Postives = 101/178 (56.74%), Query Frame = -2
Query:  275 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGK 808
            E+  ID ++G S+  + +  GE+  R   +M GY  +   T K + + GW +TGD+G I  DG + I DR K++I   G  ++  E+E++L T+P+V + AVV  PDE  GE P A + +  +  +K  E++I+ +  A +  Y   + V F + +PK+ +GKI +  LR+   ++ K
Sbjct:  368 EVKFIDPDTGRSLPKNTS--GELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPKATEK--EEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKILSINK 541          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.184e-22
Identity = 61/170 (35.88%), Postives = 97/170 (57.06%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D ++G S+  +    GEI  RG  +M GYL DP  T + ++ +GW +TGD+G I  D  L I DR K++I   G  ++  E+E++L  +P +++AAVV   DE  GE P AF  +        TE E+ ++   ++  Y   K V F E +PK+ +GKI + +LR
Sbjct:  371 EMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAF--VVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLR 536          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.184e-22
Identity = 61/170 (35.88%), Postives = 97/170 (57.06%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D ++G S+  +    GEI  RG  +M GYL DP  T + ++ +GW +TGD+G I  D  L I DR K++I   G  ++  E+E++L  +P +++AAVV   DE  GE P AF  +        TE E+ ++   ++  Y   K V F E +PK+ +GKI + +LR
Sbjct:  371 EMKIVDPDTGCSLPRNQP--GEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLINHPDISDAAVVPMIDEQAGEVPVAF--VVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVETVPKSPSGKILRKDLR 536          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_ENTFA (2-succinylbenzoate--CoA ligase OS=Enterococcus faecalis GN=menE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 59/166 (35.54%), Postives = 87/166 (52.41%), Query Frame = -2
Query:  311 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKK 808
            +I ++D    L        +GEI+ +G +++ GYL      +     DGWF TGD+G + A  YL +  R  ++IISGGEN+   EVE VL     +  AAVV  PD  WG  P A++    E+    T  +I + C  +L +Y  PK + F    P+T++GKI K
Sbjct:  315 QIKIVDE---LGQEQPEKQVGEILLKGPNVVSGYLNQRQPEK--WTADGWFKTGDMGYLDAQSYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKAAAVVGEPDAQWGAVPVAYVISDQEI----TLAQIQDQCSRKLAKYKRPKRIYFCHSFPQTASGKIAK 471          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = -2
Query:  293 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 748
            GE+  +G  +M GYL +P  T+  + +D W  TGD+     DGYL I DR K++I   G  ++  ++E+VL ++P + +AAV A P+E  GE P AF+  + E     +E+++I Y  +++  Y   + VV    +PK+ TGKI + EL+ +
Sbjct:  408 GELWIQGPGVMKGYLNNPKATQMSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAPNEECGEIPVAFVVRRQETTL--SEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKRI 557          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 63/190 (33.16%), Postives = 101/190 (53.16%), Query Frame = -2
Query:  299 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKP-TEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 865
            A E   +KS      V   E+ ++D ++G ++  + +  GEI  RG  +M GYL DP  T+  +   GW +TGD+G +  D  + I DR K++I   G  +   E+E++L T+P + +AAVV   DE  GE P AF+     +E    +E EI ++    +  Y     V F + +PK+ +GKI + +LR
Sbjct:  358 AKEPFEVKSGSCGTVVRNAELKIVDPDTGATLGRNQS--GEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIAGEVPVAFI---VRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSPSGKILRKDLR 542          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_ORYSJ (Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 63/171 (36.84%), Postives = 99/171 (57.89%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASL-GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ V+D ++G S+   G +L GEI  RG  +M GYL DP  T   +  +GW +TGD+G +  D  + I DR K++I   G  +   E+ES+L  +P++ +AAVV + D+  GE P AF+   A+ +   TE+ I E+   ++  Y     V F   +PK+++GKI + ELR
Sbjct:  398 ELKVVDPDTGFSL---GRNLPGEICIRGPQIMKGYLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAELESLLIAHPSIADAAVVPQKDDVAGEVPVAFVVRAADSD--ITEESIKEFISKQVVFYKRLHKVHFIHAIPKSASGKILRRELR 563          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D ++G S+  +    GEI  RG  +M GYL DP  T   +  DGW +TGDVG I  D  L I DR K++I   G  ++  E+ES+L  +P +N+ AVVA  +E  GE P AF  +    +   +E EI ++   ++  Y     V F + +PK  +GKI + +LR
Sbjct:  382 EMKILDPDTGDSLPRNKP--GEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEEDAGEVPVAF--VVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAPSGKILRKDLR 547          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAW (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MW2) GN=menE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
4CL2_TOBAC4.122e-2234.924-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CLL1_ARATH9.184e-2233.154-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CL2_SOLTU9.184e-2235.884-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU9.184e-2235.884-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
MENE_ENTFA1.199e-2135.542-succinylbenzoate--CoA ligase OS=Enterococcus fae... [more]
4CLL6_ARATH1.199e-2135.534-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]
4CL4_ORYSJ1.199e-2133.16Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL2_ORYSJ1.199e-2136.84Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa... [more]
4CL2_ARATH1.199e-2136.474-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
MENE_STAAW1.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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