CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig335 contig Csv1_Contig335:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAS (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MSSA476) GN=menE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAN (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain N315) GN=menE PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAM (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=menE PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAA9 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain JH9) GN=menE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAA2 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain JH1) GN=menE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAA1 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=menE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.567e-21
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAB (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=menE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.046e-21
Identity = 55/151 (36.42%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y +PK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDYEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKIPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: DHBE_BACSU (2,3-dihydroxybenzoate-AMP ligase OS=Bacillus subtilis GN=dhbE PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.046e-21
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRAR-LPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            G ++ RG   + GY K          +DG++ TGD+  +  DGY+ ++ R+KD I  GGE +++ EVE+ L  +PAV++AA+V+ PD+F GE  C F+  +   ++ P   E+  + R R L  Y +P  V F E  P+T  GK+ K  LRE
Sbjct:  379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPR---DEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAES (2-succinylbenzoate--CoA ligase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=menE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.672e-21
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = -2
Query:  263 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSKVS 748
            GE++ +G ++M GYL  P   +    +DG+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E++      + +A  V   D+ WG+ P  +     ++     + E+IE+    L RY +PK     E LP TSTGK+++ +++      GK+  S
Sbjct:  318 GELLIKGENVMNGYLY-PKYLKDTFDNDGYFQTGDIAEIDDEGYVIIYDRRKDLIISGGENIYPYQIETIAKDFEGIEDAVCVGISDDTWGQVPILYYVTNQDI----NQNELIEHFENHLARYKIPKKYYQVESLPYTSTGKLQRKKVKSEDLNEGKNNES 474          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.672e-21
Identity = 61/194 (31.44%), Postives = 105/194 (54.12%), Query Frame = -2
Query:  290 ATERARMKSRQGVRTVCFP--EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 865
            +T+ A    R G   +  P  E  ++D +SG ++  +    GE+  RG  +M GY K+   T+  +  DGW  TGD+  I  DGYL + DR K++I   G  +   E+E++L T+P V + AV+  PD   G+ P A++  K       +E+E++E+   ++  Y   + V F  ++PK ++GKI + +L ++A
Sbjct:  359 STDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRT--GELWIRGPYVMKGYFKNAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPEVTDVAVIPFPDREVGQFPMAYIVRKK--GSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDLIKLA 548          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
MENE_STAAS1.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAN1.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAM1.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA91.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA21.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA11.567e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAB2.046e-2136.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
DHBE_BACSU2.046e-2136.842,3-dihydroxybenzoate-AMP ligase OS=Bacillus subti... [more]
MENE_STAES2.672e-2133.952-succinylbenzoate--CoA ligase OS=Staphylococcus e... [more]
4CLL4_ORYSJ2.672e-2131.444-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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