CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig335 contig Csv1_Contig335:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.672e-21
Identity = 65/189 (34.39%), Postives = 101/189 (53.44%), Query Frame = -2
Query:  299 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 865
            A E   +KS      V   E+ ++D ++GLS+  +    GEI  RG  +M GYL +P  T K +  DGW +TGD+G +  D  + I DR K++I   G  ++  E+E++L  + AV +AAVV   D+  GE P AF  + A      T+ EI +Y   ++  Y     + F + +PK  +GKI + +LR
Sbjct:  345 AKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQP--GEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVAPAELEAMLIAHAAVADAAVVPMKDDSCGEIPVAF--VVARDGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLR 529          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.490e-21
Identity = 59/170 (34.71%), Postives = 97/170 (57.06%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ ++D ++G S+S +    GEI  RG  +M GYL +P  T + +  DGW +TGD+G+I  D  L I DR K++I   G  ++  E+E++L  +P + + AVVA  +E  GE P AF+    + E   +E ++ ++   ++  Y     V F E +PK  +GKI + +LR
Sbjct:  389 EMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL--SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 554          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LUCI_PHOPY (Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.953e-21
Identity = 66/191 (34.55%), Postives = 105/191 (54.97%), Query Frame = -2
Query:  266 RTVCFPEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARL-PRYMVPKTVVFKEELPKTSTGKIKKFELREM---AKAMGKSKV 826
            + V F E  V+D ++G ++  +    GE+  RG  +M GY+ +P  T   +  DGW ++GD+     D +  I DR K +I   G  ++  E+ES+L  +P + +A V   PD+  GE P A + L  E  K  TEKEI++Y  +++     +   VVF +E+PK  TGK+   ++RE+   AK  GKSK+
Sbjct:  364 KVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL--EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAR (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain MRSA252) GN=menE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.774e-21
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M GYL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P + +A  V  PD+ WG+ P  +   ++ + K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNGYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGIIDAVCVGHPDDTWGQVPKLYFVSESNISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAEQ (2-succinylbenzoate--CoA ligase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=menE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.015e-20
Identity = 54/162 (33.33%), Postives = 90/162 (55.56%), Query Frame = -2
Query:  263 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSKVS 748
            GE++ +G ++M GYL  P   +    +DG+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E++      + +A  V   D+ WG+ P  +     ++     + E+IE+    L RY +PK     + LP TSTGK+++ +++      GK+  S
Sbjct:  318 GELLIKGENVMNGYLY-PKYLKDTFDNDGYFQTGDIAEIDDEGYVIIYDRRKDLIISGGENIYPYQIETIAKDFEGIEDAVCVGISDDTWGQVPILYYVTNQDI----NQTELIEHFENHLARYKIPKKYYQVKSLPYTSTGKLQRKKVKSEDLNEGKNNES 474          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 52/161 (32.30%), Postives = 95/161 (59.01%), Query Frame = -2
Query:  272 LGEIVFRGGSMMLGYLKDPNGTRKCM-KDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKS 751
            +GE+  RG ++ LGY  +P   ++   K + +F TGD G    +G+L +  R K++I  GGE +S +E++ ++ ++P ++EA     PD+ +G+   A + LK    +K T +E++ + +  L  + +P  V F ++LPKT+TGKI++   R +A+   KS
Sbjct:  381 VGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKK--GEKMTYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQR---RVIAETFAKS 536          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAU (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus GN=menE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M  YL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAT (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=menE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M  YL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAE (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain Newman) GN=menE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M  YL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAAC (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain COL) GN=menE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M  YL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
4CL5_ORYSJ2.672e-2134.39Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL1_ARATH3.490e-2134.714-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
LUCI_PHOPY5.953e-2134.55Luciferin 4-monooxygenase OS=Photinus pyralis PE=1... [more]
MENE_STAAR7.774e-2137.092-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAEQ1.015e-2033.332-succinylbenzoate--CoA ligase OS=Staphylococcus e... [more]
FAT2_YEAST1.326e-2032.30Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
MENE_STAAU1.732e-2036.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAT1.732e-2036.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAE1.732e-2036.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAAC1.732e-2036.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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