CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig335 contig Csv1_Contig335:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAA8 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain NCTC 8325) GN=menE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M  YL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_STAA3 (2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain USA300) GN=menE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYL--KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ +G ++M  YL   D  GT     ++G+F TGD+  I  +GY+ I DR KD+IISGGEN+   ++E+V    P +++A  V  PD+ WG+ P  +   ++++ K     ++I Y    L +Y VPK     + LP TSTGK+++ +L
Sbjct:  347 GELMIKGANVMNVYLYPTDLTGTF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSQHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 489          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LUCI_LUCMI (Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.262e-20
Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = -2
Query:  287 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRY-MVPKTVVFKEELPKTSTGKIKKFELREMAK 748
            GEI  +G S+MLGY  +P  TR+ + ++GW +TGD+G    D +  I DR K +I   G  +   E+ESVL  +P + +A V   PD   GE P A + +  E  K  TEKEI++Y  +++  +  +   V F +E+PK  TGKI    +RE+ K
Sbjct:  390 GEICVKGPSLMLGYSNNPEATRETIDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVM--EKGKTMTEKEIVDYVNSQVVNHKRLRGGVRFVDEVPKGLTGKIDAKVIREILK 542          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LCFA_HAEIN (Long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae GN=fadD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.954e-20
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = -2
Query:  296 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 748
            GE+  +G  +M GY + P  T + +KD GW  TGD+ ++     L I DR KD+I+  G N+   E+E V+  N  V+EA  +  P    GET   F+  K   +   T  E+  +CR  L  Y VPK + F++ELPKT+ GKI +  LR+
Sbjct:  407 GELWVKGDQVMRGYWQRPEATSEVLKD-GWMATGDIVIMDESYSLRIVDRKKDIILVSGFNVYPNEIEDVVMLNYKVSEAVAIGVPHAVSGETIKIFVVKK---DDSLTRDELRNHCRQYLTGYKVPKEIEFRDELPKTNVGKILRRVLRD 553          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: FAT2_SCHPO (Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe GN=SPCC1827.03c PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.954e-20
Identity = 52/146 (35.62%), Postives = 85/146 (58.22%), Query Frame = -2
Query:  311 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKK 748
            GEI  RG ++  GYL +P   +     D +F TGD G +  DGY+ I  R K+++  GGE +S  E+++VL  +P V+EA   A PDE +G+   A ++  A   K  T K++ +Y   ++  + +PK   F + +PKT+TGK+++
Sbjct:  354 GEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVA--GKTVTPKQLHDYLEQKVAAFKIPKKFYFTDRIPKTATGKVQR 497          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.858e-20
Identity = 59/171 (34.50%), Postives = 97/171 (56.73%), Query Frame = -2
Query:  296 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 808
            E+  +D ++G S+  +  + GE+  R  S+M GY K    T + +   GW +TGDVG I  DG + I DR K++I   G  ++  E+E+VL ++P+V +AAV   PDE  GE P A +  +   E+   E+EI+ Y   R+  Y   + +   + +PK+ +GKI + +LR+
Sbjct:  379 EVKFVDPDTGRSLPAN--TPGELCVRSQSVMQGYYKRKEETERTVDGKGWLHTGDVGYIDGDGDVFIVDRIKELIKYKGFQVAPAELEAVLLSHPSVEDAAVFGVPDEEAGEVPVACVVRRHGAEE--GEEEIVAYVAERVASYKRVRVLHIVDAIPKSVSGKILRRQLRD 545          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.858e-20
Identity = 65/192 (33.85%), Postives = 110/192 (57.29%), Query Frame = -2
Query:  296 ATERARMKSRQGVRTVCFPEIDVIDSESGLSVSHDGASL-GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE-FWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 865
            A E  ++KS      V   E+ +ID ++G S+   G +L GEI  RG  +M GYL +P  T+  +  +GW +TGD+G +  D  + I DR K++I   G  ++  E+E++L T+P++ +AAVV +  E   GE P AF++ K E   + +E ++ ++    +  Y   + V F +++PK  +GKI + ELR+
Sbjct:  369 AKEPFKVKSGACGTVVRNAELKIIDPDTGKSL---GRNLPGEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVA-KTE-GSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKELRK 555          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM4_RAT (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Rattus norvegicus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.596e-20
Identity = 67/179 (37.43%), Postives = 94/179 (52.51%), Query Frame = -2
Query:  296 EIDVIDSESGLSVSHDGASLGEIVFRGGS-----MMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEK---EIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 808
            ++ +ID    +  S      GEI  R GS         Y+ +P  T   ++ + ++ TGD GV+  DGYL    R+ DVIIS G  +   EVES L  +PAV E+AVV+ PD   GE   AF+ L A  +    EK   E+ ++ +     Y  P+ V F +ELPKT TGKIK+  LR+
Sbjct:  400 DVQIIDEHGNILPS---GKEGEIALRLGSDRPFCFFSEYVDNPEKTDATIRRN-FYITGDRGVMDDDGYLWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVLRD 574          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.466e-19
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  302 LGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 751
            +GEI+ +G  +  GY K    T K + ++ W +TGD+G +   GYL + DR  D+IISGGEN+   E+E+VL     + EA V   P+E WG  P AF+     +    +E EI  +    L +Y  PK +    ELP+ +  K+ +  L
Sbjct:  334 IGEILVKGPMVTKGYYKRAE-TNKEVFENNWLHTGDMGYLDEQGYLYVVDRRNDLIISGGENIYPSEIENVLVQIEGIEEAGVKGSPNEEWGMVPIAFIVCSRPI----SENEIAAHLEKYLAKYKRPKEIHVVNELPRNAANKLVRHNL 478          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM4_HUMAN (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Homo sapiens GN=ACSM4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.466e-19
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = -2
Query:  296 YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEK---EIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 709
            Y+ +P  T   ++ D ++ TGD GV+ +DGY     R+ DVIIS G  +   EVES L  +PAV E+AVV+ PD+  GE   AF+ L A  +    EK   E+ ++ +     Y  P+ V F +ELPKT TGKIK+  LR+
Sbjct:  435 YVDNPQKTAATIRGD-FYVTGDRGVMDSDGYFWFVGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDQIRGEVVKAFVVLAAPFKSYNPEKLTLELQDHVKKSTAPYKYPRKVEFVQELPKTITGKIKRNVLRD 574          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
MENE_STAA81.732e-2036.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
MENE_STAA31.732e-2036.422-succinylbenzoate--CoA ligase OS=Staphylococcus a... [more]
LUCI_LUCMI2.262e-2038.06Luciferin 4-monooxygenase OS=Luciola mingrelica PE... [more]
LCFA_HAEIN2.954e-2037.75Long-chain-fatty-acid--CoA ligase OS=Haemophilus i... [more]
FAT2_SCHPO2.954e-2035.62Putative peroxisomal-coenzyme A synthetase OS=Schi... [more]
4CLL9_ORYSJ3.858e-2034.504-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
4CL1_ORYSJ3.858e-2033.85Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
ACSM4_RAT8.596e-2037.43Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
MENE_OCEIH1.466e-1935.332-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
ACSM4_HUMAN1.466e-1941.13Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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