CB293848

Overview
NameCB293848
Unique NameCB293848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.466e-19
Identity = 58/170 (34.12%), Postives = 93/170 (54.71%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ V+D E+G S+ ++    GEI  RG  +M GYL D   T   +  +GW +TGDVG +  D  + I DR K++I   G  +   E+E +L ++P++ +AAVV + D   GE P AF+      +   TE+ + E+   ++  Y     V F   +PK+ +GKI + +LR
Sbjct:  386 ELKVVDPETGRSLGYNQP--GEICIRGQQIMKGYLNDEAATASTIDSEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDL--TEEAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLR 551          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSF3_BOVIN (Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.501e-19
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = -2
Query:  302 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDR-SKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFEL 748
            GE++ RG S+   Y   P  T+     DGWF TGD  V+  DG   I+ R S D+I SGG  +S++EVE +L  +P++ + AV+  PD  WG+   A ++L+       + +E+ E+ R  L  Y VP  ++  EE+P+   GK+ K +L
Sbjct:  423 GELLVRGPSVFREYWDKPEETKAAFTSDGWFKTGDT-VVFKDGCYWIRGRTSVDIIKSGGYKVSALEVERLLLAHPSITDVAVIGVPDMTWGQRVTAVVTLQE--GHSLSHRELKEWARGVLAPYAVPSELLLVEEIPRNQMGKVNKRDL 569          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.266e-19
Identity = 58/170 (34.12%), Postives = 93/170 (54.71%), Query Frame = -2
Query:  299 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 808
            E+ V+  E+ LS+ ++    GEI  RG  +M  YL DP  T   + ++GW +TGD+G +  D  + I DR K+VI   G  +   E+ES+L  + ++ +AAVV + DE  GE P AF  +        TE+++ EY   ++  Y     V F   +PK+ +GKI + +L+
Sbjct:  392 ELKVVHLETRLSLGYNQP--GEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQVPPAELESLLINHHSIADAAVVPQNDEVAGEVPVAF--VVRSNGNDITEEDVKEYVAKQVVFYKRLHKVFFVASIPKSPSGKILRKDLK 557          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: VIBE_VIBCH (Vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase OS=Vibrio cholerae GN=vibE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.266e-19
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = -2
Query:  263 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSKVS 748
            G ++ +G   + GY +     ++     G++ TGD   + ++GY+ +  R+KD I  GGE +++ EVE+ L  +PAV++AA++A  DE+ GE  CA + LK E      + +   + +A L  Y +P  + F ++LPKTS GKI K  LR     +G + +S
Sbjct:  383 GYLLTQGPYTIRGYYRADQHNQRAFNAQGFYITGDKVKLSSEGYVIVTGRAKDQINRGGEKIAAEEVENQLLHHPAVHDAALIAISDEYLGERSCAVIVLKPEQSVNTIQLKRFLH-QAGLADYKIPDQIQFIDQLPKTSVGKIDKNALRRRFDTLGLALMS 543          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_PROSL (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus sp. (strain LE138) GN=caiC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.572e-19
Identity = 49/154 (31.82%), Postives = 86/154 (55.84%), Query Frame = -2
Query:  299 LGEIVFRGGS---MMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G +   +   Y   P+ T K ++ DGW +TGD G    +G+    DRS ++I  GGEN+S +E+E+++ ++P + + AV+  PD+   E   AF+ L     +  +E+    +C   + ++ VP  V FK+ LP+  +GK+ K  L+
Sbjct:  367 VGEICVKGEAGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYRDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVD--GETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: CAIC_PROMH (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.572e-19
Identity = 49/154 (31.82%), Postives = 86/154 (55.84%), Query Frame = -2
Query:  299 LGEIVFRGG---SMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 751
            +GEI  +G    ++   Y   P+ T K ++ DGW +TGD G    +G+    DRS ++I  GGEN+S +E+E+++ ++P + + AV+  PD+   E   AF+ L     +  +E+    +C   + ++ VP  V FK+ LP+  +GK+ K  L+
Sbjct:  367 VGEICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVD--GETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: ACSM3_MOUSE (Acyl-coenzyme A synthetase ACSM3, mitochondrial OS=Mus musculus GN=Acsm3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = -2
Query:  296 YLKDPNGTRKCMKDDGWFY-TGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL---EKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 709
            Y+ +P+ T   ++  G FY TGD G +  DGY     RS D+I+S G  +   EVES L  +P++ E+AVV+ PD   GE   AF+ L  +    +++  +KEI E+ +     Y  P+ V F EELPKT +GK+K+ ELR+
Sbjct:  435 YVDNPSKTASTLR--GSFYITGDRGYMDEDGYFWFVARSDDIILSSGYRIGPFEVESALIEHPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKSHDQEQLKKEIQEHVKKTTAPYKYPRKVEFIEELPKTVSGKVKRNELRK 574          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 56/175 (32.00%), Postives = 95/175 (54.29%), Query Frame = -2
Query:  284 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKA 808
            E  ++  E+G S   +    GEI  RG +MM GYL +P  T++ +    W +TGD+G  + DG L + DR K++I   G  ++  E+E +L ++P + +A V+  PDE  GE P AF+          TE++I ++   ++  Y   + V F   +PK++ GKI + EL +  ++
Sbjct:  372 EAQIVSVETGKSQPPN--QQGEIWVRGPNMMKGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSP--NSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQQVRS 542          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 54/172 (31.40%), Postives = 95/172 (55.23%), Query Frame = -2
Query:  293 IDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYM-VPKTVVFKEELPKTSTGKIKKFELREM 805
            + +I  E+G ++       GEI  +G ++MLGY  +   T + +  DG+F TGD+G +  DGY  I DRSK++I   G  +   E+E++L ++P V +A VV       GE P  F+ +K    +  TEKE++++   ++  Y      + F   +PK++TGK+ +  L+++
Sbjct:  379 VKIISPETGENLGM--GEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPPAELEALLLSHPKVADACVVGLSKGDMGEVPRGFVVIKQ--NESLTEKELLDWAHPKIANYKHFRGGIFFIPAIPKSATGKLLRKNLKDI 546          
BLAST of CB293848 vs. ExPASy Swiss-Prot
Match: LUCI_LUCLA (Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.241e-18
Identity = 55/155 (35.48%), Postives = 86/155 (55.48%), Query Frame = -2
Query:  287 GEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPR-YMVPKTVVFKEELPKTSTGKIKKFELREMAK 748
            GE+  +G  +M GY+ +P  TR+ + ++GW +TGD+G    + +  I DR K +I   G  +   E+ESVL  +P + +A V   PD   GE P A + L  E  K  TEKE+++Y  +++     +   V F +E+PK  TGKI    +RE+ K
Sbjct:  390 GEVCVKGPMLMKGYVDNPEATREIIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPNIFDAGVAGVPDPIAGELPGAVVVL--EKGKSMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGKAIREILK 542          
The following BLAST results are available for this feature:
BLAST of CB293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 334
Match NameE-valueIdentityDescription
4CL2_SOYBN1.466e-1934.124-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
ACSF3_BOVIN2.501e-1936.00Acyl-CoA synthetase family member 3, mitochondrial... [more]
4CL3_ARATH3.266e-1934.124-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
VIBE_VIBCH4.266e-1933.33Vibriobactin-specific 2,3-dihydroxybenzoate-AMP li... [more]
CAIC_PROSL5.572e-1931.82Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_PROMH5.572e-1931.82Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
ACSM3_MOUSE9.504e-1939.44Acyl-coenzyme A synthetase ACSM3, mitochondrial OS... [more]
4CLL7_ARATH9.504e-1932.004-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]
4CL2_DICDI9.504e-1931.40Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]
LUCI_LUCLA1.241e-1835.48Luciferin 4-monooxygenase OS=Luciola lateralis PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293848 ID=CB293848; Name=CB293848; organism=Citrus sinensis; type=EST; length=887bp
TTTTTTTTTTTTTTTTTAATATAAATTTTTTGTACTATTTAACTTAAATT
CAATGGTCTACACATTACTAATGCAGTAAAAAGACAAAAAAAATTACAGC
CCCATGAAAGAGGAACCTATGCTCCAAGTTGTGTAAGTGAAAAACAAGAA
TGGGACATAACAAATCATATGCGCAAATCAAACTTCATACCAAACATACC
GACACATGACGTAGGCCCAAATTATTATCACATCCCGAGTCAAATCGGTA
GCTCTACATCCGACTCACTTTCGATTTGCCCATCGCCTTCGCCATCTCTC
TTAATTCAAACTTCTTAATCTTCCCCGTCGAAGTCTTCGGCAACTCCTCC
TTGAACACCACCGTTTTAGGCACCATGTAACGCGGCAACCTCGCTCTACA
GTACTCAATAATCTCCTTCTCAGTTGGTTTCTTTTCCAATTCAGCCTTCA
AGCTCAAAAACGCACACGGGGTCTCCCCCCAAAACTCATCAGGCCGAGCC
ACGACAGCCGCCTCGTTAACGGCCGGATTCGTGTACAGCACCGATTCAAC
CTCCACGCTGCTCAAATTCTCTCCCCCGCTTATTATCACATCCTTTGATC
GATCTTTAATCTCTAAATAACCGTCCGCGTGAATCACGCCAACGTCTCCC
GTGTAAAACCAACCATCATCCTTCATGCACTTGCGGGTCCCGTTAGGGTC
TTTGAGATAACCAAGCATCATGCTTCCGCCTCTGAACACGATTTCACCGA
GCGATGCCCCGTCGTGACTCACACTGAGTCCTGACTCGGAATCTATAACG
TCTATTTCGGGGAAGCAAACCGTCCTCACTCCTTGTCTCGATTTCATCCT
CGCCCTCTCCGTCGCCGGGAACCTATTCCACTTATTT
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